View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_high_9 (Length: 305)
Name: NF8103_high_9
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 29240837 - 29241120
Alignment:
| Q |
1 |
ggaacattagatctgtaagttcttgtcctcgtttttacttactcttgtttgtgcgatcaatttggccttccctgttcatgcttttgcatattttgtgtta |
100 |
Q |
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| T |
29240837 |
ggaacattagatctgtaagttcttgtcctcgtttttacttactcttgtttgtgcgatcaatttggccttccctgttcatacttttgcatattttgtgtta |
29240936 |
T |
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| Q |
101 |
caaccaatgcagaaatccg-----aagtgcctctttatccagcaatttagggcaagctagcgagccaaattcagaggaggaagcagacggcaaacgaaga |
195 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
29240937 |
caaccaatgcagaaatccgggtttaagtgcctctttatccagcaatttagggcaagctagcgagcctaattcagaggaggaagcagacgacaaacgaaga |
29241036 |
T |
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| Q |
196 |
agagatgggtggggttctaataaaaaagtgatttcgtagctgctccaaagactcatcctgtcagttctaaatgtagacgaatat |
279 |
Q |
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| T |
29241037 |
agagatgggtggggttctaataaaaaagtgatttcgtagctgatccaaagactcatcctgtcagttctaaacgtagacgaatat |
29241120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 16828380 - 16828651
Alignment:
| Q |
1 |
ggaacattagatctgtaagttcttgtcctcgtttttacttactcttgtttgtgcga---tcaatttggccttccctgttcatgcttttgcatattttgtg |
97 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||| ||||||||||||| |
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| T |
16828380 |
ggaacattagatccgtaagttcttgtcctcttttttacttacgcttgtttgtgcagctctcaatctggccttccttgttcatacttatgcatattttgtg |
16828479 |
T |
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| Q |
98 |
ttacaaccaatgcagaaatccg-----aagtgcctctttatccagcaatttagggcaagctagcgagccaaattcagaggaggaagcagacggcaaacga |
192 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || | | || || |
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| T |
16828480 |
ttacaaccaatgcagaaatccgggtttaagtgcctctttatccagcaaatcagggcaagctagcgagccaaattcagaggaggaagcggaagaccaaaga |
16828579 |
T |
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| Q |
193 |
agaagagatgggtggggttctaat-aaaaaagtgatttcgtagctgctccaaagactcatcctgtcagttct |
263 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
16828580 |
agaagagatgggtggggttctaataaaaaaagtgatttctcagctgctccaaaggctcatcctgtcagttct |
16828651 |
T |
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