View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_10 (Length: 344)
Name: NF8103_low_10
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 51106165 - 51106488
Alignment:
| Q |
11 |
gatggacatcaagaaataacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagg |
110 |
Q |
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| T |
51106165 |
gatgtacatcaagaaataacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagg |
51106264 |
T |
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| Q |
111 |
gtcagcattccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattc |
210 |
Q |
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| T |
51106265 |
gtcagcattccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattc |
51106364 |
T |
|
| Q |
211 |
aattgagcaccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgcaatgctgtctggccactacgatcttttgcattta |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51106365 |
aattgagcaccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacggcactccaatgcaatgctgtctagccactacgatcttttgcattta |
51106464 |
T |
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| Q |
311 |
tatctccaccatgatgaatgatgt |
334 |
Q |
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| T |
51106465 |
tatctccaccatgatcaatgatgt |
51106488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 51115508 - 51115824
Alignment:
| Q |
18 |
atcaagaaataacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagggtcagca |
117 |
Q |
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| T |
51115508 |
atcaagaaataacagaagacatataaaatcagcaaaacctttgtaagcagcccaatgcaaggggcttcttccttcattatcaggaacatcaggctcagcg |
51115607 |
T |
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| Q |
118 |
ttccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattcaattgag |
217 |
Q |
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| T |
51115608 |
ttccattttgaaacaagatggtaaaggaaagctgtatgaccatattgagctgcaacatgtgttgtctgatacccatacttgtcagcagaattcaattcag |
51115707 |
T |
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| Q |
218 |
caccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgcaatgctgtctggccactacgatcttttgcatttatatctcc |
317 |
Q |
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||||||||||||||||||| ||||||||||||| | |||| || || ||||||||||||||||| || |||||| |||||||| |||| ||||||||||| |
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| T |
51115708 |
caccctctttgagtaaaagctctgcaacctcaatacaacctcgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcgtttatatctcc |
51115807 |
T |
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| Q |
318 |
accatgatgaatgatgt |
334 |
Q |
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| T |
51115808 |
accatgatcgatgatgt |
51115824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 183 - 323
Target Start/End: Complemental strand, 48033900 - 48033760
Alignment:
| Q |
183 |
ctgatacccatccttgtcagcagaattcaattgagcaccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgcaatgct |
282 |
Q |
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||||||||||| | ||||||||| |||| | |||||||||||| |||||| || |||||||||| || || |||||| || |||||||||||||||||| |
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| T |
48033900 |
ctgatacccattcatgtcagcagcgttcactcgagcaccctcttggagtaatagctctgcaacctgaatagcaccccgaaccgcactccaatgcaatgct |
48033801 |
T |
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| Q |
283 |
gtctggccactacgatcttttgcatttatatctccaccatg |
323 |
Q |
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| T |
48033800 |
gtctggccagaatgatctgttgcatttacatctccaccatg |
48033760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 48034221 - 48034113
Alignment:
| Q |
69 |
ccaatgcaatgggcttcttccatcattatcaagaacgtcagggtcagcattccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagca |
168 |
Q |
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||||||||| |||| ||||||||| |||||| || | ||||||||||||||||||||||||| || | ||||||||||| || ||| ||||||||||| |
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| T |
48034221 |
ccaatgcaaggggcatcttccatctttatcaggagcatcagggtcagcattccattttgaaataacatagtaaaggaaagccgtctgaccatattgagca |
48034122 |
T |
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| Q |
169 |
gcaacatgt |
177 |
Q |
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||||||||| |
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| T |
48034121 |
gcaacatgt |
48034113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 48035985 - 48035932
Alignment:
| Q |
17 |
catcaagaaataacagaagacgaattaaatcagaaaaacctttgcaagcagccc |
70 |
Q |
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| T |
48035985 |
catcaagaaataacagaagacgtatacaatcagcaaaacctttgtaagcagccc |
48035932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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