View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_12 (Length: 321)
Name: NF8103_low_12
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 54896226 - 54895934
Alignment:
| Q |
20 |
attcgtgtgttatttgtttgatcactaatcaatatacttgttttctgttttgtttatttgttttctggtttatgatggctgtggaggatcgtttggtggg |
119 |
Q |
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| T |
54896226 |
attcgtgtgttatttgtttgatcactaatcaatatacttgttttctgttttgtttatttgttttctggtttatgatggctgtggaggatcgtttggtggg |
54896127 |
T |
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| Q |
120 |
tgaagatgttacagaagaaggttttccagttggtatgcgtgttctggctgttgatgatgatcagactagtctcaaagtgctggagaagcatcttctcaca |
219 |
Q |
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| T |
54896126 |
tgaagatgttacagaagaaggttttccagttggtatgcgtgttctggctgttgatgatgatcagactagtctcaaagtgctggagaagcatcttctcaca |
54896027 |
T |
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| Q |
220 |
tgcaagtataatggttcgttgcctttctttttcatttggtcaatttgattctccatttatgatgctttcatgttttcacttactattcttctc |
312 |
Q |
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| T |
54896026 |
tgcaagtataatggttcgttgcctttctttttcatttggtcaatttgattctccatttatgatgctttcatgttttcacttactattcttctc |
54895934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 54907369 - 54907252
Alignment:
| Q |
135 |
agaaggttttccagttggtatgcgtgttctggctgttgatgatgatcagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggt |
234 |
Q |
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|||||||||||| | ||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
54907369 |
agaaggttttccggcgggtatgcgtgttctggcagttgatgacgatccaacttatctcaaagtgctggagaagcaacttctcacatgcaactataatggt |
54907270 |
T |
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| Q |
235 |
tcgttgcctttctttttc |
252 |
Q |
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| T |
54907269 |
tcgttgcctttctttttc |
54907252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 54890909 - 54890694
Alignment:
| Q |
21 |
ttcgtgtgttatttgtttgatcactaatcaatatacttgttttctgttttgtttatttgttttctggtttatgatggctgtggaggatcgtttggtgggt |
120 |
Q |
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|||| |||| |||||| |||||||| ||||||| |||||||||||||||| |||||| || |||||| | ||||||||||||| ||| ||||| || | |
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| T |
54890909 |
ttcgagtgtgatttgtctgatcactgatcaata--cttgttttctgttttggatatttgatt-ctggttcacgatggctgtggagaatcctttggaggtt |
54890813 |
T |
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| Q |
121 |
gaagatgt-tacagaagaaggttttccagttggtatgcgtgttctggctgttgatgatgatcagactagtctcaaagtgctggagaagcatcttctcaca |
219 |
Q |
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||| |||| | |||| |||| |||||| || |||||||||||||||||||||||||| ||||| ||| |||||||| || |||||||| |||||| | |
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| T |
54890812 |
gaaaatgtcttcaga-gaagattttccggtgggtatgcgtgttctggctgttgatgacgatcaaacttgtctcaaactgttggagaagtttcttcttatg |
54890714 |
T |
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| Q |
220 |
tgcaagtataatggttcgtt |
239 |
Q |
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|||||||||||||||||||| |
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| T |
54890713 |
tgcaagtataatggttcgtt |
54890694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 22084543 - 22084579
Alignment:
| Q |
140 |
gttttccagttggtatgcgtgttctggctgttgatga |
176 |
Q |
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||||||| ||||||||||||||||| ||||||||||| |
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| T |
22084543 |
gttttcctgttggtatgcgtgttcttgctgttgatga |
22084579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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