View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_13 (Length: 319)
Name: NF8103_low_13
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_13 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 1701603 - 1701903
Alignment:
| Q |
19 |
tcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatg |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
1701603 |
tcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttcggtcatccctctttcagagttcttgcacaaatg |
1701702 |
T |
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| Q |
119 |
atgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttctt |
218 |
Q |
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||||||| |||||||| ||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
1701703 |
atgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgccatattaataaaagtcataagcttcctttttctgtttctt |
1701802 |
T |
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| Q |
219 |
ctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgt |
318 |
Q |
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| T |
1701803 |
ctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctctcctatcacttcagttcatggttacaaatattatcttgtgtttgt |
1701902 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
1701903 |
t |
1701903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 181176 - 181434
Alignment:
| Q |
19 |
tcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatg |
118 |
Q |
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| T |
181176 |
tcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatg |
181275 |
T |
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| Q |
119 |
atgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttctt |
218 |
Q |
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| T |
181276 |
atgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttctt |
181375 |
T |
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| Q |
219 |
ctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcct |
277 |
Q |
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| T |
181376 |
ctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttctcct |
181434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 319
Target Start/End: Original strand, 5400484 - 5400639
Alignment:
| Q |
164 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
263 |
Q |
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||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
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| T |
5400484 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
5400583 |
T |
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| Q |
264 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgtt |
319 |
Q |
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| T |
5400584 |
ggggaccatcccctataacgtccattaatggttacaggtattatcttgtctttgtt |
5400639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 319
Target Start/End: Original strand, 3541459 - 3541614
Alignment:
| Q |
164 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
263 |
Q |
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||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
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| T |
3541459 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
3541558 |
T |
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| Q |
264 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgtt |
319 |
Q |
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| T |
3541559 |
ggggaccatcccctataacgtccatcaatggttacaagtattatcttgtctttgtt |
3541614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 26592600 - 26592535
Alignment:
| Q |
254 |
tctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgtt |
319 |
Q |
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||||||||||||||||| || ||||| || || |||||||||| | ||| ||||||||||||||| |
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| T |
26592600 |
tctgatgtttggggaccatcccctataacatccattaatggttatagatactatcttgtgtttgtt |
26592535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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