View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_15 (Length: 318)
Name: NF8103_low_15
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 53617725 - 53617418
Alignment:
| Q |
16 |
acttaattacctgatactgaccattaaagtctattttccttttctagnnnnnnnnnnnnn--gtgagacaactacttttaatttgcttaattatcaaact |
113 |
Q |
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| T |
53617725 |
acttaattacctgatactgaccattaaagtctattttccttttctagaaaaaaaaagaaaaggtgagacaactacttttaatttgcttaattatcaaact |
53617626 |
T |
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| Q |
114 |
atgcatgaaaactcacacacacgcacaaaagagagatcccaggttcaaaccaaggtaaccttaggtccaacaatctcggcattgtgagtggacctatgtc |
213 |
Q |
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| T |
53617625 |
atacatgaaaattcacatacacccacaaaggagagattccagattcaaaccaaggtaaccttaagtccaacaatctcggcattgtgagtggacctatgtc |
53617526 |
T |
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| Q |
214 |
tgacaaactattactaaacaattctcct---taacatcaatgtatcatattaatcaataatatcttaccgtgttaatgaaaaagttgctgtgtgaagttt |
310 |
Q |
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| T |
53617525 |
ttacaaactattactaaacaattctcctgcataacatcaatgtatcatattaatcaataatatcttaccgtgttaatgaaaaatttgctgtgtgaagttt |
53617426 |
T |
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| Q |
311 |
tatcatcc |
318 |
Q |
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| T |
53617425 |
tatcatcc |
53617418 |
T |
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