View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_19 (Length: 259)
Name: NF8103_low_19
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 11631381 - 11631204
Alignment:
| Q |
64 |
gtgaaagatttcgacattttcataatattcccacttaggatttccgcttcagttttgataccatagtagttcatcagatttcccaatttgtagtcataat |
163 |
Q |
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| T |
11631381 |
gtgaaagattttgacattttcataatatttccacttaggatttctgcttcagttttgataccatagtagtccatcagatttcccaacttgtagtcataat |
11631282 |
T |
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| Q |
164 |
tggttttgtgatagaaggcattgtcaacataatccataaatccgtcgaattccatgcccaaatcataggactctttag |
241 |
Q |
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| T |
11631281 |
tggttttgtgatagaatgcatcgtcaacataatccataaagccctcgaattccatgtcggaatcataggactctttag |
11631204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 11675259 - 11675437
Alignment:
| Q |
63 |
ggtgaaagatttcgacattttcataatattcccacttaggatttccgcttcagttttgataccatagtagttcatcagatttcccaatttgtagtcataa |
162 |
Q |
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| T |
11675259 |
ggtgaaagatttcgacattttcataatattcccacttaggatttctgattcagttttgataccatagtagtccatcagatttcccaacttgtagtcataa |
11675358 |
T |
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| Q |
163 |
ttggttttgtgatagaaggcattgtcaacataatccataaatccgtcgaattccatgcccaaatcataggactctttag |
241 |
Q |
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| T |
11675359 |
ttggttttgtgatagaaggcatcgtcgacataatccataaagccctcgaattccatatccgaatcatatgactccttag |
11675437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 11682746 - 11682901
Alignment:
| Q |
63 |
ggtgaaagatttcgacattttcataatattcccacttaggatttccgcttcagttttgataccatagtagttcatcagatttcccaatttgtagtcataa |
162 |
Q |
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| T |
11682746 |
ggtgaaagatttcgacattttcataatattcccactaatgatttctgattcagttttgataccatagtagtccatcagatttcccaacttgtagtcataa |
11682845 |
T |
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| Q |
163 |
ttggttttgtgatagaaggcattgtcaacataatccataaatccgtcgaattccat |
218 |
Q |
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| T |
11682846 |
ttggttttgtgatagaaagcatcgtcggcataatccataaagcccacgaattccat |
11682901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 11640144 - 11639988
Alignment:
| Q |
63 |
ggtgaaagatttcgacattttcataatattcccacttaggatttccgcttcagttttgataccatagtagttcatcagatttcccaatttgtagtcataa |
162 |
Q |
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| T |
11640144 |
ggtgaaagatttagccattttcataatattcccactgaggatttctgattcagttttgataccatagtagtccatcagatttcccaacttctcatcataa |
11640045 |
T |
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| Q |
163 |
ttggttttgtgatagaaggcattgtcaacataatccataaatccgtcgaattccatg |
219 |
Q |
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|||| ||||| |||||||||| || ||||||||||||||||| || | ||||||| |
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| T |
11640044 |
ttggatttgtagtagaaggcatcatcgacataatccataaatccatcaacttccatg |
11639988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11675170 - 11675218
Alignment:
| Q |
16 |
acatcagccccgccgtcatcgaaccaactcctcgcctctttccttaggg |
64 |
Q |
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| T |
11675170 |
acatcagccgcaccgtcattgaaccaactcctcgcctctttccttaggg |
11675218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 11631467 - 11631423
Alignment:
| Q |
20 |
cagccccgccgtcatcgaaccaactcctcgcctctttccttaggg |
64 |
Q |
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| T |
11631467 |
cagccccgctgtcagtgaaccaactccttgcctctttccttaggg |
11631423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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