View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8103_low_2 (Length: 730)

Name: NF8103_low_2
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8103_low_2
NF8103_low_2
[»] chr6 (6 HSPs)
chr6 (8-576)||(31151926-31152492)
chr6 (8-205)||(22981504-22981710)
chr6 (8-205)||(23806698-23806904)
chr6 (84-267)||(1111378-1111564)
chr6 (654-713)||(22981841-22981900)
chr6 (654-713)||(23806508-23806567)
[»] chr5 (7 HSPs)
chr5 (8-405)||(33807820-33808213)
chr5 (8-405)||(33811474-33811867)
chr5 (8-405)||(33816392-33816785)
chr5 (563-713)||(33811158-33811307)
chr5 (563-713)||(33816076-33816225)
chr5 (91-186)||(16698504-16698601)
chr5 (91-186)||(22763905-22764002)
[»] chr3 (10 HSPs)
chr3 (8-414)||(50602993-50603403)
chr3 (8-258)||(54967210-54967477)
chr3 (8-205)||(44782524-44782733)
chr3 (91-258)||(39298736-39298908)
chr3 (89-205)||(18556392-18556511)
chr3 (615-713)||(54967873-54967971)
chr3 (160-264)||(31725346-31725448)
chr3 (20-205)||(54979854-54980051)
chr3 (87-186)||(17645800-17645897)
chr3 (8-60)||(17645928-17645981)
[»] chr1 (2 HSPs)
chr1 (8-223)||(29706854-29707069)
chr1 (91-183)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (26-258)||(26516-26752)
[»] chr8 (3 HSPs)
chr8 (8-258)||(41481548-41481815)
chr8 (8-258)||(36167547-36167813)
chr8 (13-202)||(18951129-18951326)
[»] chr7 (13 HSPs)
chr7 (8-205)||(4842648-4842857)
chr7 (8-258)||(25857131-25857395)
chr7 (7-258)||(4835574-4835840)
chr7 (89-205)||(13465046-13465165)
chr7 (99-268)||(8252686-8252853)
chr7 (615-706)||(24379927-24380018)
chr7 (91-186)||(27341025-27341120)
chr7 (82-203)||(17845847-17845969)
chr7 (91-205)||(24379370-24379487)
chr7 (562-712)||(4836159-4836304)
chr7 (8-58)||(24380113-24380163)
chr7 (91-157)||(38994151-38994218)
chr7 (7-78)||(24379278-24379347)
[»] scaffold0479 (2 HSPs)
scaffold0479 (8-205)||(2727-2936)
scaffold0479 (615-713)||(2176-2274)
[»] chr4 (3 HSPs)
chr4 (8-258)||(9757212-9757480)
chr4 (89-186)||(37286972-37287069)
chr4 (91-203)||(42682924-42683038)
[»] chr2 (2 HSPs)
chr2 (93-186)||(37037942-37038035)
chr2 (26-60)||(37038074-37038108)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-186)||(342217-342404)


Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Original strand, 31151926 - 31152492
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 107  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  31151926 tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa 31152025  T
Q  108 ccttctcaatgtgagtaaggaaaa-accacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 206  Q
    ||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31152026 ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac 31152125  T
Q  207 ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact 306  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31152126 ctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatttttctctcacactcttacgaggaactctctatttttctctcaact 31152225  T
Q  307 ctatgtgagtgaggattatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttctc 406  Q
    |     || || |  || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31152226 cccgaggattgtg--ttgtgttgtggtgtgat-tgctttgctgaagctcttctctatttatagagagatttgaaccacaaacattgaatgcttggttctc 31152322  T
Q  407 acattcaaccactatactccaccgtccttgacttttgtactaccatttgccatgctttcaaattgcttctgacacaaattgaagttaagcaccacaagct 506  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31152323 acattcaaccactatactcaaccgtccttgacttttgaactaccatctgccgtgctttcaaattgcttctgacacaaattgaagttaagcaccgcaagct 31152422  T
Q  507 actttctataggcatgtaggagaagaaatttcaacatttctcatagtgccttactatggctggaacccat 576  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  31152423 actttctataggcatgtaggagaagaaatttcaacatctctcatagtgccttactatagctggaacccat 31152492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 22981710 - 22981504
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag 98  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| |||||||  |||||||||||  ||||| |        |||||  | ||||||||    
T  22981710 tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag 22981614  T
Q  99 cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 195  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | |||||||    
T  22981613 cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc 22981514  T
Q  196 ctcaggtgga 205  Q
    || |||||||    
T  22981513 cttaggtgga 22981504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 23806698 - 23806904
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag 98  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| |||||||  |||||||||||  ||||| |        |||||  | ||||||||    
T  23806698 tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag 23806794  T
Q  99 cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 195  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | |||||||    
T  23806795 cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc 23806894  T
Q  196 ctcaggtgga 205  Q
    || |||||||    
T  23806895 cttaggtgga 23806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 84 - 267
Target Start/End: Original strand, 1111378 - 1111564
Alignment:
Q  84 acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatct-ccactataataataatgggaat 182  Q
    ||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | |||| ||||||||||| | |  |||||||||||| ||||    
T  1111378 acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat 1111477  T
Q  183 acaaatcttcaccctcaggtggacctaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatatttttctc 267  Q
    |||||  |||||||| | ||  |||||||||||||||||||||||  |||||| |  ||||||||||||| ||  ||||||||||||    
T  1111478 acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatatttttctc 1111564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 713
Target Start/End: Original strand, 22981841 - 22981900
Alignment:
Q  654 caaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattg 713  Q
    |||||||| || || ||||||| ||||| |||||||||||| ||||||||||| ||||||    
T  22981841 caaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattg 22981900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 713
Target Start/End: Complemental strand, 23806567 - 23806508
Alignment:
Q  654 caaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattg 713  Q
    |||||||| || || ||||||| ||||| |||||||||||| ||||||||||| ||||||    
T  23806567 caaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattg 23806508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 33808213 - 33807820
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33808213 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33808116  T
Q  108 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808115 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33808016  T
Q  208 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808015 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc 33807916  T
Q  308 tatgtgagtgaggattatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttct 405  Q
    |||||||||||||||| ||||||||||||   | | |||||||| ||||||||||||||||||| | ||||||||    ||||| |||||||||||||    
T  33807915 tatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttct 33807820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 33811867 - 33811474
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33811867 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33811770  T
Q  108 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811769 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33811670  T
Q  208 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811669 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc 33811570  T
Q  308 tatgtgagtgaggattatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttct 405  Q
    |||||||||||||||| ||||||||||||   | | |||||||| ||||||||||||||||||| | ||||||||    ||||| |||||||||||||    
T  33811569 tatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttct 33811474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 33816785 - 33816392
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33816785 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33816688  T
Q  108 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816687 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33816588  T
Q  208 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816587 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc 33816488  T
Q  308 tatgtgagtgaggattatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttct 405  Q
    |||||||||||||||| ||||||||||||   | | |||||||| ||||||||||||||||||| | ||||||||    ||||| |||||||||||||    
T  33816487 tatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttct 33816392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 563 - 713
Target Start/End: Complemental strand, 33811307 - 33811158
Alignment:
Q  563 tggctggaacccatcaattctccccctccagccaaagaggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactct 662  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||    
T  33811307 tggctggaaaccaacaattctccccctccagccaaag-ggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactct 33811209  T
Q  663 attttctcttttgatagagcttttgtcatcatatctgctccattgtcattg 713  Q
    || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  33811208 atcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattg 33811158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 563 - 713
Target Start/End: Complemental strand, 33816225 - 33816076
Alignment:
Q  563 tggctggaacccatcaattctccccctccagccaaagaggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactct 662  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||    
T  33816225 tggctggaaaccaacaattctccccctccagccaaag-ggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactct 33816127  T
Q  663 attttctcttttgatagagcttttgtcatcatatctgctccattgtcattg 713  Q
    || |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  33816126 atcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattg 33816076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
Q  91 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 186  Q
    |||||||| ||||||| ||||||||||||||| || |||||||  | ||||||| |   ||||||||| | ||||||||||| |||||||||||||||    
T  16698601 aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa 16698504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
Q  91 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 186  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||||||||||  |  |||||||||| | |   ||||||| |||||||||||||||    
T  22763905 aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa 22764002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 50603403 - 50602993
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 107  Q
    |||||||||||||| |   |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  50603403 tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa 50603304  T
Q  108 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 207  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||    
T  50603303 ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc 50603204  T
Q  208 taactatgtatctcaatttgtagatacaactctc--acaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaac 305  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  50603203 taactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttttctct--cactcttatgaggaactttctatttttctctcaac 50603106  T
Q  306 tctatgtgagtgaggat-----tatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttg 400  Q
    ||| |||||||||||||     ||||||||||||| || |||||||||||||||||||||||||||||||||||  ||||||  ||||||| ||||||||    
T  50603105 tctgtgtgagtgaggattgtgctatgttgtggtgt-gtttgctttgctgaagctcttctctatttatagagagaaatgaaccgtaagcattaaatgcttg 50603007  T
Q  401 gttctcacattcaa 414  Q
    |||| ||| |||||    
T  50603006 gttcacactttcaa 50602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 54967210 - 54967477
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 96  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  54967210 tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt 54967306  T
Q  97 agcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttc 192  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||| |  |||||||  |||  ||||||||||| ||||||||||||||| | ||||    
T  54967307 agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc 54967406  T
Q  193 accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 258  Q
    ||||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  54967407 acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 54967477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 44782524 - 44782733
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 96  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  44782524 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 44782620  T
Q  97 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 192  Q
    ||||||||||||||||||||| |||| ||||  |||||||||||||||| |   ||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  44782621 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc 44782720  T
Q  193 accctcaggtgga 205  Q
    ||||| |||||||    
T  44782721 acccttaggtgga 44782733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
Q  91 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc 189  Q
    |||||||| ||| ||||||||||||||||||  ||||||||| |||||||||| |  ||||||||||  ||||||||||| |||| |||||||||| | |    
T  39298908 aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac 39298809  T
Q  190 ttcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 258  Q
    |||||||| ||||||| |||||     ||| | ||||||||||||   || |||||||||||||||||||||||    
T  39298808 ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat 39298736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
Q  89 aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 186  Q
    ||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||   |||||||||||  ||||||||||| | |||| ||||||||    
T  18556392 aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa 18556491  T
Q  187 -atcttcaccctcaggtgga 205  Q
     | ||||||||| |||||||    
T  18556492 caacttcacccttaggtgga 18556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 615 - 713
Target Start/End: Original strand, 54967873 - 54967971
Alignment:
Q  615 gattagtttggggttgctgctatgcctgcagcctctttacaaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattg 713  Q
    ||||| |||||||||||||| |  || ||||| | ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||    
T  54967873 gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattg 54967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 31725346 - 31725448
Alignment:
Q  160 tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata 259  Q
    |||| ||||| ||||||| |||||||||||||||| || |||||||||| || ||||||||||||||||||  |||| ||||||||||||  | ||||||    
T  31725346 tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattgattaactata 31725443  T
Q  260 ttttt 264  Q
    |||||    
T  31725444 ttttt 31725448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 54979854 - 54980051
Alignment:
Q  20 cctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaaac 108  Q
    ||||| ||||||||||||||||| ||||||||||| |||||  ||||||||||| ||||           |||||| || | ||||||||| ||||||||    
T  54979854 cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac 54979950  T
Q  109 cttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg 204  Q
    ||||||||| |||| || |||||||||||||||||| |  |||||||  |||  ||||||||||| ||||||||||||||| | ||||||||| ||||||    
T  54979951 cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg 54980050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
Q  87 acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 186  Q
    ||||||||||||||||||||||||||||||| | |  ||  |||||||||||||| | | ||| |||||||  ||||||||||| ||||||  |||||||    
T  17645897 acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa 17645800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 17645981 - 17645928
Alignment:
Q  8 tgttgggaaatg-cctgcttaatttccctcctccgtgaactcaaaataggcact 60  Q
    |||||||||||| ||| | ||||||||||| |||||||||||||||||| ||||    
T  17645981 tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacact 17645928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 107  Q
    |||||| |||||||| | ||||||| ||| |||||||||| |||||| ||||||||||  ||| ||||||||||||||||||||||||||| | ||||||    
T  29706854 tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa 29706953  T
Q  108 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 207  Q
    |||||||||| ||||||||||| || |||||||| | ||  |||||||||||||||||||||||||||||| |  | |||||||||||||| ||||||||    
T  29706954 ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc 29707053  T
Q  208 taactatgtatctcaa 223  Q
    ||||||||||||||||    
T  29707054 taactatgtatctcaa 29707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
Q  91 aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaata 183  Q
    |||||| ||||| ||||||||||||||||||| |||| ||||| ||||||  ||    | ||||||||  ||||||||||||||||||||||||    
T  27642225 aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata 27642132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 26 - 258
Target Start/End: Original strand, 26516 - 26752
Alignment:
Q  26 taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa 125  Q
    |||| |||||||| |||||||||||||||| |||||||||| ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||    
T  26516 taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa 26613  T
Q  126 ggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaat-cttcaccctcaggtggacctaacta-----tgtatc 219  Q
    |||||||| ||||||||| |  ||||||||||  |||||| |||| |||| | |||||||| | || |||||| ||||||| || ||||     | | ||    
T  26614 ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaactactccacccttaggtggatctcactacaatttatctc 26713  T
Q  220 tcaatttgtagatacaactctcacaaattggctcactat 258  Q
    ||||||||||   |  |||||||||||||||||||||||    
T  26714 tcaatttgtaaggaacactctcacaaattggctcactat 26752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 41481815 - 41481548
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 96  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  41481815 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 41481719  T
Q  97 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 192  Q
    ||||||||||||||||||||| |||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  41481718 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 41481619  T
Q  193 accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 258  Q
    ||||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  41481618 acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 41481548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 36167813 - 36167547
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt 96  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |           ||||||||| || | ||||||    
T  36167813 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 36167717  T
Q  97 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 192  Q
    ||||||||||||||||||||| |||| ||||  ||||||||| |||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  36167716 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 36167618  T
Q  193 accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 258  Q
    ||||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  36167617 acccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat 36167547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 18951129 - 18951326
Alignment:
Q  13 ggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa 106  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||| | ||||      |  |    ||| ||||||||| ||||||    
T  18951129 ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcact--agcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa 18951226  T
Q  107 accttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt 202  Q
    |||||||||||||||| ||||  |||||||||| ||||  |  || ||||||| | ||||||||||| ||||||||||||||| | ||||||||| ||||    
T  18951227 accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt 18951326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 4842648 - 4842857
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt 96  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |           ||||||||| || | ||||||    
T  4842648 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt 4842744  T
Q  97 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 192  Q
    |||||||||||||||||||||||||| ||||  ||||||||| |||||| |  |||||||||| | ||||||||||| ||||| ||||||||| | ||||    
T  4842745 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttc 4842844  T
Q  193 accctcaggtgga 205  Q
    ||||| |||||||    
T  4842845 acccttaggtgga 4842857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 25857131 - 25857395
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 96  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||||| ||||           |||||| |    ||||||    
T  25857131 tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt 25857225  T
Q  97 agcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttca 193  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | |||||    
T  25857226 agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca 25857325  T
Q  194 ccctcaggtggacctaact---atgtatctc--aatttgtagatacaactctcacaaattggctcactat 258  Q
    || | ||||||| || |||   || ||||||  ||||||||   |  |||||||||||||||||||||||    
T  25857326 cctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat 25857395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 4835574 - 4835840
Alignment:
Q  7 gtgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttag 98  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||  || |||||||| ||||  | ||      ||| | | ||||||||    
T  4835574 gtgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttag 4835671  T
Q  99 cgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcac 194  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||| ||| | ||||||    
T  4835672 cgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcac 4835771  T
Q  195 cctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 258  Q
    ||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  4835772 ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 4835840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
Q  89 aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 186  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  13465046 aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa 13465145  T
Q  187 -atcttcaccctcaggtgga 205  Q
     |  ||||||||||||||||    
T  13465146 caagttcaccctcaggtgga 13465165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 268
Target Start/End: Original strand, 8252686 - 8252853
Alignment:
Q  99 cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctc 198  Q
    |||||||||||||||||| |||||||||| |      |||||| |||||| ||||||| ||  || | ||||||||| ||||||||||| ||||| | |     
T  8252686 cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt 8252779  T
Q  199 aggtggacctaacta----tgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctct 268  Q
    || ||||| ||| ||    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||    
T  8252780 agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatatttttctct 8252853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 615 - 706
Target Start/End: Original strand, 24379927 - 24380018
Alignment:
Q  615 gattagtttggggttgctgctatgcctgcagcctctttacaaaactctattttctcttttgatagagcttttgtcatcatatctgctccatt 706  Q
    |||||||||||||||||||| |  || ||||| | ||| ||||||||||| |||||||||||||||| |||||||||||| || ||||||||    
T  24379927 gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccatt 24380018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
Q  91 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 186  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||| |   |||||||||  || |||| ||| ||||||| |||||||    
T  27341025 aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa 27341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
Q  82 acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa 181  Q
    |||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| |||||  |   |||||||||  ||||||||||| ||||||| ||    
T  17845969 acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa 17845870  T
Q  182 tacaa-atcttcaccctcaggtg 203  Q
    ||||| | ||||||||| |||||    
T  17845869 tacaacaacttcacccttaggtg 17845847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
Q  91 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a 187  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||| |  |  |||||||||| | ||||||||||| ||||| ||||||||| |    
T  24379370 aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca 24379469  T
Q  188 tcttcaccctcaggtgga 205  Q
     ||||||||| |||||||    
T  24379470 acttcacccttaggtgga 24379487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 562 - 712
Target Start/End: Original strand, 4836159 - 4836304
Alignment:
Q  562 atggctggaacccatcaattctccccctccagccaaagaggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactc 661  Q
    ||||||||| |||| |||||||||||||||||||| || ||||     ||||| ||||||||||||||||| | || || ||||| | ||| ||||||||    
T  4836159 atggctggacccca-caattctccccctccagccataggggaatg---cctta-attagtttggggttgctaccattccagcagcttgtttgcaaaactc 4836253  T
Q  662 tattttctcttttgatagagcttttgtcatcatatctgctccattgtcatt 712  Q
    ||| |||||||| | ||| | |||||||||||| ||||||||||| |||||    
T  4836254 tatcttctctttcggtagcggttttgtcatcatgtctgctccattctcatt 4836304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggca 58  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  24380163 tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca 24380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
Q  91 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaa 157  Q
    ||||||| |||||||||||||||||||| ||| || ||||||||||||||||||   |||||||||||    
T  38994151 aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa 38994218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 24379278 - 24379347
Alignment:
Q  7 gtgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat 78  Q
    ||||||| ||||| || | ||||||| |||||||||||||| |||||||||||  ||| |||||||||||||    
T  24379278 gtgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat 24379347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 2936 - 2727
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 96  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  2936 tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 2840  T
Q  97 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 192  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  2839 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 2740  T
Q  193 accctcaggtgga 205  Q
    ||||| |||||||    
T  2739 acccttaggtgga 2727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 615 - 713
Target Start/End: Complemental strand, 2274 - 2176
Alignment:
Q  615 gattagtttggggttgctgctatgcctgcagcctctttacaaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattg 713  Q
    |||||||||||||||||||| |  || ||||| | ||| |||||||| || |||||||||| ||||| ||| |||||||| ||||||||||| ||||||    
T  2274 gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattg 2176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 9757212 - 9757480
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 96  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  9757212 tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 9757308  T
Q  97 agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atctt 191  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||| |  ||||||||||     ||||||||||| ||||||||||||||| | |||    
T  9757309 agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt 9757408  T
Q  192 caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 258  Q
    |||||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  9757409 cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat 9757480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
Q  89 aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 186  Q
    ||||||||||| |||||||||||||||||||||  ||||||||| |||||||||| ||||| |||||||  |||||||||||||||||  ||||||||    
T  37286972 aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa 37287069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
Q  91 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-at 188  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |   ||||||||| | ||||||||||| ||||||||||||||| |     
T  42682924 aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa 42683023  T
Q  189 cttcaccctcaggtg 203  Q
    ||||||||| |||||    
T  42683024 cttcacccttaggtg 42683038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
Q  93 ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 186  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||||||| |  ||||||||||  | ||||||||  |||||| ||||||||    
T  37038035 ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa 37037942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
Q  26 taatttccctcctccgtgaactcaaaataggcact 60  Q
    ||||||| |||||||||||||||||||||||||||    
T  37038108 taatttctctcctccgtgaactcaaaataggcact 37038074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 342217 - 342404
Alignment:
Q  8 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat---------gacacacaacaaaattttag 98  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||||  |||| ||||||| ||||            |||||| | ||||||||    
T  342217 tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcac--tagcagaaacgtgaaatataagcgtaatgacacaa-agaattttag 342313  T
Q  99 cgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 186  Q
    |||| |||||||||||||| |||| || |||| ||||||||||| || |  |||||||||| | ||||||||||| |||||||||||||||    
T  342314 cgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa 342404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University