View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_23 (Length: 250)
Name: NF8103_low_23
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29048650 - 29048887
Alignment:
| Q |
1 |
agttcgcgagtcgaatccatatcgatgtttttcttgatggtggataccatgtgttagatgaatcaacttattatagcagtgatcttaggcctacttcaag |
100 |
Q |
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| T |
29048650 |
agttcgcgagtcgaatccatatcgatgtttttcttgatggtggataccatgtgttagatgaatcaacttattatagcagtgatcttaggcctacttcaag |
29048749 |
T |
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| Q |
101 |
acaactatggaagaaagcaattggtgtattggaacttggcattttgaatgctgatgtacaaccaaccaaaactagggatggtagaggggcagcagatgta |
200 |
Q |
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| T |
29048750 |
acaactatggaaaaaagcaattggtgtattggaacttggcattttgaatgctgatgtacaaccaaccaaaactagggatggtagaggggcagcagatgta |
29048849 |
T |
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| Q |
201 |
tactgtgtggcaaaatatggtcacaaatgggtgcgaac |
238 |
Q |
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| T |
29048850 |
tactgtgtggcaaaatatggtcacaaatgggtgcgaac |
29048887 |
T |
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Back To:
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 11703809 - 11703618
Alignment:
| Q |
32 |
tcttgatggtggataccatgtgttagatgaatcaacttattatagcagtgatcttaggcctacttcaagacaactatggaagaaagcaattggtgtattg |
131 |
Q |
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| T |
11703809 |
tcttgatggtgggtaccatgttttcgacgagtcaacttatcatagtagtgatctcagaccgacatcaaggcagctgtggaagaagccgattggcgtctta |
11703710 |
T |
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| Q |
132 |
gaacttggcattttgaatgctgatg---tacaaccaaccaaaactagggatggtagaggggcagcagatgtatactgtgtggcaaaatatgg |
220 |
Q |
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| T |
11703709 |
gaacttggcattctaaatgttgatggacttcatcctatgaaagccagggatggaagaggaacatcagatgcatactgtgtggcaaaatatgg |
11703618 |
T |
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