View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_25 (Length: 248)
Name: NF8103_low_25
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 29643520 - 29643741
Alignment:
| Q |
30 |
ttttgttatagaaataacatatacatgaacactcatac--gataagtgcttatgctttacgcacttactcaaactgtttatcataacttggtttctagtt |
127 |
Q |
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| T |
29643520 |
ttttgttataggaataacatataaatgaacactcatatatgataagtgcttatgctttacgtgcttactcaaactgtttatcataacttggtttctagtt |
29643619 |
T |
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| Q |
128 |
ctgtaacttctattgataagctattacacagaaattaagtgtgattagacattagtaattcttaaaatattgtcatcgtctagttttgataaatggttga |
227 |
Q |
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| T |
29643620 |
ctgtaacttctatcgataagctattacacagaaattaagtgtgattagacattagtaattcttaaaatattgtcatcgtctagttttgataaatggttga |
29643719 |
T |
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| Q |
228 |
taacaaactc-tatgatttttt |
248 |
Q |
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| T |
29643720 |
taacaaactcttatgatttttt |
29643741 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 42817480 - 42817544
Alignment:
| Q |
30 |
ttttgttatagaaataacatatacatgaacactcatacgataagtgcttatgctttacgcactta |
94 |
Q |
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| T |
42817480 |
ttttggtatagaaataacatataaatcaacacttatatgataaacgcttatgctataagcactta |
42817544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 4200195 - 4200131
Alignment:
| Q |
30 |
ttttgttatagaaataacatatacatgaacactcatacgataagtgcttatgctttacgcactta |
94 |
Q |
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| T |
4200195 |
ttttgttataaaaataacttatatataaacacttagatgataagtgcttatgctatacgcactta |
4200131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 30207672 - 30207723
Alignment:
| Q |
28 |
ttttttgttatagaaataacatatacatgaacactcatacgataagtgctta |
79 |
Q |
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| T |
30207672 |
ttttttgttatagaactaacatatacataagcacttatatgataagtgctta |
30207723 |
T |
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