View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_3 (Length: 621)
Name: NF8103_low_3
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 149 - 607
Target Start/End: Original strand, 13168868 - 13169320
Alignment:
| Q |
149 |
aacctgaacctcctaagtttaaacagaaaggagttgtagaagtattgcaattgcaaggccatggtgtgacagagaattcttggagactagagaaacgagt |
248 |
Q |
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| T |
13168868 |
aacctgaacctcctaagttcaaacagaaaagagttatggaaggattgcaattgcaaggccttagtgtgacaaagaagtcttggagacta-agcaacgagc |
13168966 |
T |
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| Q |
249 |
ggcatatgtttctcggagaaacggtgaacaagttcggctacaaaggctcttaagtgaggtgcatcatatagttaaaacttcaagcttctcaagaaataaa |
348 |
Q |
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| T |
13168967 |
agcataaatttctcggagaaatggcgaacaatttctgctacaaaggctcttaagtgaggtgcatcatatacttcatacttcaagcttctcaagagataga |
13169066 |
T |
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| Q |
349 |
actgatgaaacaacattgtgacaagctttcataaaggctcagttctacaagtttaagatttggggcacatgacaaaattggacactctttcataaaggct |
448 |
Q |
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| T |
13169067 |
actgatgaatcaacattg-gacaagctttcataaaggcttagttctacaagtttaagatttggggcacaggacaaagtttgacactcttt----taggct |
13169161 |
T |
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| Q |
449 |
tttggattatgtaacaaaatgtaattgacagaaacagactgaacaagttagtgttatacatatatatgagttagttagatcaatgtatttttagacagac |
548 |
Q |
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| T |
13169162 |
tgttgattatgtaacaaaatgtaaatgacagaaacagactgaacaagttagtattatgcatatatatgagttagttaaatcaatgtagttttaaacagac |
13169261 |
T |
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| Q |
549 |
taatttcttccacagattgtgcactgaacacaatatggtctttatctcaattctctctg |
607 |
Q |
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| T |
13169262 |
taatttcttccacagattgtgcactgaacactatatggtctttatctcaattctctctg |
13169320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 5649659 - 5649716
Alignment:
| Q |
79 |
agtaaatttcagttcaagtttgttcattatttaactgttctatgacagaagtcaagat |
136 |
Q |
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| T |
5649659 |
agtaaatatcatttcaagtttgatcattattgaactggtctatggcagaagtcaagat |
5649716 |
T |
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