View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_33 (Length: 201)
Name: NF8103_low_33
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 41761800 - 41761978
Alignment:
| Q |
1 |
ttacgtcaacaattttcattggttatggagataatgaaaaaggagatcaatttgtataaattttatgaaaataagtaaaaccaaattttnnnnnnn--ga |
98 |
Q |
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| T |
41761800 |
ttacgtcaacaattttcattggtta--------atgaaaaaggagatcaatttgtataaattttatgaaaataagtaaaaccaaatttttaaaaaaaaga |
41761891 |
T |
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| Q |
99 |
taaactcaataaatattttatgagtgtttatgaaacaacgtaattaaatgaatcaaaagtttgtctttattattataatttagaata |
185 |
Q |
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| T |
41761892 |
taaactcaataaatattttaagagtgtttttgaaacaacgtaattaaatgaatcaaaagtttgtctttattattataatttagaata |
41761978 |
T |
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