View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8103_low_4 (Length: 453)
Name: NF8103_low_4
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 46129530 - 46129100
Alignment:
| Q |
19 |
cctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgacttgctaaagaacattaagggtcgtccg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46129530 |
cctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgacatgctaaagaacattaagggtcgtccg |
46129431 |
T |
|
| Q |
119 |
acatgcattatatgtagctctagctctaacatggaccnnnnnnn-caacagaattctgttaaagcctcttatattggcaattggtaccgctccttaatca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46129430 |
acatgcattatatgtagctctagctctaacatggaccttttttttcaacagaattctgttaaagcctcttatattggcaattggtaccgctccttaatca |
46129331 |
T |
|
| Q |
218 |
tggctatgctcttgatatggaacaa----ctatcatagttaccctaaattctaaaacatgaaagtattaattacaattttgaattttccaacaatacaac |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46129330 |
tggctatgctcttgatatggaacaattatatatcatagttaccctaaattctaaaacatgaaagtattaattacaattttgaattttccaacaatacaac |
46129231 |
T |
|
| Q |
314 |
aaatttttggtatcttaacatcatagaataattagttcttctactctatccttctaaca-ttaagtgtcaagtttagcatatttcgttagagtcatatta |
412 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46129230 |
aaatttttggtatcttaacatcatggaataattagttcttctactctatccttctaacatttaagtgtcaagtttagcatatttcgttagagtcatatta |
46129131 |
T |
|
| Q |
413 |
ttaaccattttcaattactaatggagtatta |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
46129130 |
ttaaccattttcaattactaatggagtatta |
46129100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 96 - 450
Target Start/End: Complemental strand, 46702267 - 46701912
Alignment:
| Q |
96 |
taaagaacattaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccnnnnnnn-------caacagaattctgttaaagcctctta |
188 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||| |||||||||||| |
|
|
| T |
46702267 |
taaacaacattaagggtcgtccgacatgcattatatgtagctctaactctaaaatggactttttttttctctctcaatagaattctgataaagcctctta |
46702168 |
T |
|
| Q |
189 |
tattggcaattggtaccgctccttaatcatggctatgctcttgatatggaacaactatcatagttaccctaaattctaaaacatgaaagtattaattaca |
288 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46702167 |
tattggcaattggtatcgctccttaatcatggctatgctcttgatatggaacaattatcatagttaccctaaattctaaaacatgaaagtattaattaca |
46702068 |
T |
|
| Q |
289 |
attttgaattttccaacaatacaacaaatttttggtatcttaacat--catagaataattagttcttctactctatccttctaacattaagtgtcaagtt |
386 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46702067 |
atttt-------ccaacaatacaacaaatttttggtatcttaacatatcatagaataattagttcttctaatctatccttctaacattaagtgtcaagtt |
46701975 |
T |
|
| Q |
387 |
tagcatatttcgttagagtcatattattaaccattttcaattactaatggagtattatctaccc |
450 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
46701974 |
tggcatatttcgttagagtcatattattaaccattttc-attactaatggagtattatttaccc |
46701912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 46702311 - 46702243
Alignment:
| Q |
23 |
tttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccgac |
91 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
46702311 |
tttcattgcaggaatggtttgcgcctgttaaacaccattaagagtaaacaacattaagggtcgtccgac |
46702243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 443
Target Start/End: Complemental strand, 46123256 - 46123110
Alignment:
| Q |
296 |
attttccaacaatacaacaaatttttggtatcttaacat--catagaataattagttcttctactctatccttctaacattaagtgtcaagtttagcata |
393 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||| |||||| || ||||||||| ||||| ||| ||| |||| | | |||||||||| ||| |
|
|
| T |
46123256 |
attttccaataataca-caagtttttggtatcttaacatatcatagactagttagttcttttactccctccatct--catttaatttcaagtttagaata |
46123160 |
T |
|
| Q |
394 |
tttcgttagagtcatattattaaccattttcaattactaatggagtatta |
443 |
Q |
| |
|
|||||| | |||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
46123159 |
attcgtttgtgtcatattatctgccattttaaattactaatggagcatta |
46123110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 46123395 - 46123358
Alignment:
| Q |
118 |
gacatgcattatatgtagctctagctctaacatggacc |
155 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
46123395 |
gacatgcattatatgtagctctaggtctaaaatggacc |
46123358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University