View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_7 (Length: 383)
Name: NF8103_low_7
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 31584116 - 31584319
Alignment:
| Q |
11 |
atatatgtaaacaatacttatatttctatcatatcatgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatattgtaacnnnnnnnggnnnnnn |
110 |
Q |
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| T |
31584116 |
atatatctaaacaatacttctatttatatcttatcatgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatattgtaactttttctcggaaaaa |
31584215 |
T |
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| Q |
111 |
ngtattgcaaattttaaatagataacacttatacgcatgttccattatggccagcccaaacattcaaactatttaacatttggatcatcccaattcgaac |
210 |
Q |
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| T |
31584216 |
aatattgcaaattttaaatagataacacttgtacgcatgttccattatcgccagcccaaacattcaaactatttaacatttggatcatcccaattcgaac |
31584315 |
T |
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| Q |
211 |
atcc |
214 |
Q |
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|||| |
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| T |
31584316 |
atcc |
31584319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 31584392 - 31584477
Alignment:
| Q |
280 |
aattatcttctctctttatcaagagatatgaaaaggattgaaaaggattgaaggatgtttgaatcaagagggtccaaatccatcgt |
365 |
Q |
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| T |
31584392 |
aattatcttctctctttatcaagagatataaaaaggattgaaaaggattgaaggatgtttgaatcaagagggtccaaatccgtcgt |
31584477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 31582281 - 31582325
Alignment:
| Q |
46 |
atgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatatt |
90 |
Q |
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| T |
31582281 |
atgcatgaatatgtgtacgtgtatgtgtgtagtttaagtaatatt |
31582325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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