View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8103_low_8 (Length: 376)

Name: NF8103_low_8
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8103_low_8
NF8103_low_8
[»] chr1 (1 HSPs)
chr1 (10-376)||(42156398-42156764)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 42156398 - 42156764
Alignment:
Q  10 gagaagaatgggaaaggtatctcaaacaaaatttatacatctaatcaaaggaaaactatttagattgacaatcatcaaagaagaactttattaaacacta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42156398 gagaagaatgggaaaggtatctcaaacaaaatttatacatctaatcaaaggaaaactatttagattgacaatcatcaaagaagaactttattaaacacta 42156497  T
Q  110 acattgtgaaagcttgatcaaataatgataggcacacatgtttattatttcattatgttcaagctcatagnnnnnnncatttcaaaattcaaataagtcc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  42156498 acattgtgaaagcttgatcaaataatgataggcacacatgtttattatttcattatgttcaagctcatagaaaaaaacatttcaaaattcaaataagtcc 42156597  T
Q  210 taattcacactttgggttctcttttagccaagtctttttgtggcataaagacatgttgctattgtctgcaaaattagcaggcattctttctattttaaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42156598 taattcacactttgggttctcttttagccaagtctttttgtggcataaagacatgttgctattgtctgcaaaattagcaggcattctttctattttaaat 42156697  T
Q  310 gaactccactcatctccccatgtggggcatttgggtattttgagaaaacagaacaaatatggagaag 376  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42156698 gaactccactcatctccccatgtggggcatttgggtattgtgagaaaacagaacaaatatggagaag 42156764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University