View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_low_9 (Length: 358)
Name: NF8103_low_9
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 227573 - 227243
Alignment:
| Q |
14 |
agaggcgtgttc-agtggggtaagacgtattggtactgataagttccttcggacggcgcgtcttagtctggtgaatgtctagtccacaagtcataatagg |
112 |
Q |
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| T |
227573 |
agaggcgtgttccattggggtaagacgtactggtactgatatgttccttcggacggcgcgtcttagtccggtgaacgtctagtccacaagtcacaatggg |
227474 |
T |
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| Q |
113 |
attgattttctgactggttcagagcagattggatgagggatacatactcaatcaaaatccataagtaccggaatgatcatcttttacataagtattttga |
212 |
Q |
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| T |
227473 |
attgattttctgacccgttcaaaacagattggatgagggatacatactcaatcaaaatccatgagtaccggaatgatcatcttttacataagtattttga |
227374 |
T |
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| Q |
213 |
tatatgtttaaagaataaatagtgaaattagtccgtaaaccgtccatttttcatcattttgatccataaactatttaaatcaactaaaaagatctctaaa |
312 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227373 |
tatatgtttaaagaataaatagtcaaattaatccgtaaaccgtccatttttcatcattttgatccataaactatttaaatcaactaaaaagatctctaaa |
227274 |
T |
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| Q |
313 |
ctatatacgaaaaagtaattaatgaggttga |
343 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
227273 |
ctatatacgaaaaagtaattaatgaggttga |
227243 |
T |
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