View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8104_high_1 (Length: 643)
Name: NF8104_high_1
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 3e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 55141733 - 55141512
Alignment:
| Q |
16 |
catcatggagaaggagatagaatagacgggaacgcaataataataccaattcttctctaactcatatttgcttcttttctattctctttttcgtatttag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55141733 |
catcatggagaaggagatagaatagacgggaacgcaataata---ccaattct-ctctaactcatatttgcttcttttctattctctttttcgtatttac |
55141638 |
T |
|
| Q |
116 |
aataaataaatattctattttctttgttgctctctataagtggcaaaaagacaaagagtaatttatgccttatggcttgtgtgcatatattaagttattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55141637 |
aataaataaatattctattttctttgttgctctctataagtggccaaaagacaaaggataatttatgccttatggcttgtgtgcatatattaagttattt |
55141538 |
T |
|
| Q |
216 |
aaaatttatacatttatgctgaaaga |
241 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
55141537 |
aaaatttaaacatttatgctgaaaga |
55141512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 291 - 403
Target Start/End: Complemental strand, 55141479 - 55141367
Alignment:
| Q |
291 |
gaaggacatatggtgataactagttcattaacttaaacttacgcccttcgggtacatatcagtattttcttagagaagataaatttattttcgagatatg |
390 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55141479 |
gaaggacatatggtgataattagttcattaacttaaacttacgcccttcgggtacatatcagtattttcttagagaagataaatttattttcgacatatg |
55141380 |
T |
|
| Q |
391 |
gaaactgtgatgc |
403 |
Q |
| |
|
||||||||||||| |
|
|
| T |
55141379 |
gaaactgtgatgc |
55141367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 433 - 518
Target Start/End: Complemental strand, 55141335 - 55141250
Alignment:
| Q |
433 |
atatactaacactagttagggatagaaataattcaaaccaacttataggggtaatagtctagtctacatcaaccttagagcatctt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55141335 |
atatactaacactagttagggatagaaataattcaaaccgacttataggggtaatagtctagtctacatcaaccttagagcatctt |
55141250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 546 - 624
Target Start/End: Complemental strand, 55141240 - 55141162
Alignment:
| Q |
546 |
aaccttagagcatctctaacaagagttttatcatagaattttaagtaatattatatagtcatagagttttatcaccata |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
55141240 |
aaccttagagcatctctaacaagagttttatcatagaattttaagtaatattatatagtcgtagagttttatcaccata |
55141162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University