View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8104_high_2 (Length: 472)
Name: NF8104_high_2
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Original strand, 15172303 - 15172752
Alignment:
| Q |
8 |
tatcatagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaacagacaagcattgtatggatatgatcc |
107 |
Q |
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| T |
15172303 |
tatcatagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaacagacaagcattgtatggatatgatcc |
15172402 |
T |
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| Q |
108 |
accagtttccgagaaaaggccaaagatgacatgtgattgttggcctaaatggtgttgcttttgttgtggttcaaggaaaaccaaatcaaaaaagaagtca |
207 |
Q |
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| T |
15172403 |
accagtttccgagaaaaggccaaagatgacatgtgattgttggcctaaatggtgttgcttttgttgtggttcaaggaaaaccaaatcaaaaaagaagtca |
15172502 |
T |
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| Q |
208 |
ggaacaaatggaagaagtctctttagtagattgtacaagaagaagaaaatggggggaaaagattatgttagaaaagggtctggttccatgtttgatcttg |
307 |
Q |
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| T |
15172503 |
ggaacaaatggaagaagtctctttagtagattgtacaagaagaagaaaatgggaggaaaagattatgttagaaaaggttctggttccatgtttgatctcg |
15172602 |
T |
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| Q |
308 |
aagagattgaagaaggacttgaagggtatgaggagctagagaaatcatcacttatgtcacagaaaagtttcgagaagcgattcggtcagtcaccagtttt |
407 |
Q |
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| T |
15172603 |
aagagattgaagaaggacttgaagggtatgaggagctagagaaatcatcacttatgtcacagaaaagtttcgagaagcgattcggtcagtcaccagtttt |
15172702 |
T |
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| Q |
408 |
cattgcttcaactttgatggaaaatggaggacttcctgaaggcacaaata |
457 |
Q |
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| T |
15172703 |
cattgcttcaactttgatggaaaatggaggacttcctgaaggcacaaata |
15172752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 30258495 - 30258593
Alignment:
| Q |
13 |
tagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaacagacaagcattgtatggatatgatccacca |
111 |
Q |
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| T |
30258495 |
tagatcaacatgaaatgccttgatggaattcaaggtccagtgtatgttggtactggatgtgtgttcaacaggcaggcattatatggctataagccacca |
30258593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 30258757 - 30258805
Alignment:
| Q |
395 |
agtcaccagttttcattgcttcaactttgatggaaaatggaggacttcc |
443 |
Q |
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| T |
30258757 |
agtcaccagttttcattgcttctgcattgatggaagatggtggacttcc |
30258805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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