View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8104_high_3 (Length: 446)
Name: NF8104_high_3
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_high_3 |
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| [»] scaffold0262 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 13458023 - 13458453
Alignment:
| Q |
1 |
tcaagtccaagaaagatgcattcccttgtttctacaaggcctattctcaccttcggatgaaaaactggtaggtcaggagctca---gtatggtgtagact |
97 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13458023 |
tcaagtctaagaaagatgcattcccttgtttctacaaggcctattctcaccttcggatgaaaaactggtaggtcaggagctcatcagtatggtgtagact |
13458122 |
T |
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| Q |
98 |
tgattgtctatcgcaatcatccggctcgggtgcattctgagtattgtgtgtttgttctatcacatgagatcgatgatcacctaaatgaaagattgagagt |
197 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13458123 |
tgattgtccatcgcaatcatccggctcgggtgcattctgagtattgtgtgtttgttctatcacatgagatcgatgattacctaaatgaaagattgagagt |
13458222 |
T |
|
| Q |
198 |
atggtctgatgttcattgcacaacttgaattcttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctg |
297 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13458223 |
atggtctgatgttcattgcacaacttgacttcttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctg |
13458322 |
T |
|
| Q |
298 |
ctatgtttcacaaactataccgttgaagaacgcacaatctctagatggagtccagaacaatgccgtgaaagatccatatagacatttcatattcttaatt |
397 |
Q |
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| T |
13458323 |
ctatgtttcacaaactataccgttgaagaacgcacaatctctagatggagtccagaacaatgccgtgaaagatccatatagacatttcatattcttaatt |
13458422 |
T |
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| Q |
398 |
ttattattattattccctttctgcatagttt |
428 |
Q |
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| T |
13458423 |
ttattattattattccctttctgcatagttt |
13458453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 424
Target Start/End: Complemental strand, 36663498 - 36663074
Alignment:
| Q |
5 |
gtccaagaaagatgcattcccttgtttctacaaggcctattctcaccttcggatgaaaaactggt-----aggtcaggagctcagtatggtgtagacttg |
99 |
Q |
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|||||||||||| ||||||||| |||||||||||| |||||||| ||| | |||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
36663498 |
gtccaagaaagaaacattcccttatttctacaaggcttattctcatcttagaatgaaaaattgggttgtgaggtcaggggctcagtatggtgtagacttg |
36663399 |
T |
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| Q |
100 |
attgtctatcgcaatcatccggctcgggtgcattctgagtattgtgtgtttgttctatcacatgagatcgatgatcacctaaatgaaagattgagagtat |
199 |
Q |
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| T |
36663398 |
attgtctatcgccatcatcctgctcgggtgcattctgagtatggtgtacttgttctatctcatgacaaggatggtgatctaaatggaagattgagagtat |
36663299 |
T |
|
| Q |
200 |
ggtctgatgttcattgcacaacttgaattcttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctgct |
299 |
Q |
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| T |
36663298 |
ggtctgatgttcattgcacaactcgacttcttggaggtgttgcaaaaaccttattagttttgtacgttaacaaaaatggtaacaatgatgagtctctgtt |
36663199 |
T |
|
| Q |
300 |
atgtttcacaaactataccgttgaagaacgcacaatctctagatggagtccagaacaatgccgtgaaagatccatatagacatttcatattcttaatttt |
399 |
Q |
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| T |
36663198 |
atgtttgacaaactataccgttgaagaacgcacaatctcccgatggagtccagaacaatgccgtgaaagatccatatagacatgtcatgttcttaatatt |
36663099 |
T |
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| Q |
400 |
attattattattccctttctgcata |
424 |
Q |
| |
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|||||| ||||||||||| |||||| |
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| T |
36663098 |
attattgttattccctttttgcata |
36663074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 6801 - 6373
Alignment:
| Q |
1 |
tcaagtccaagaaagatgcattcccttgtttctacaaggcctattctcaccttcggatgaaaaactggt-----aggtcaggagctcagtatggtgtaga |
95 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||| | |||||||||||||||| |
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| T |
6801 |
tcaagtccaagaaagaaacattcccttatttctacaaggcttattctcaccttcgaatgaaaaactgggtagtgaggtcaaggtctcagtatggtgtaga |
6702 |
T |
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| Q |
96 |
cttgattgtctatcgcaatcatccggctcgggtgcattctgagtattgtgtgtttgttctatcacatgagatcgatgatcacctaaatgaaagattgaga |
195 |
Q |
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||| ||||| |||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||| | |||| | | |||||| |||||||||| |
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| T |
6701 |
ctttattgtttatcgccatcatccggcttgggtgcattctgagtatggtgtacttgttctatcacatgacaatgatggtgaattaaatggaagattgaga |
6602 |
T |
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| Q |
196 |
gtatggtctgatgttcattgcacaacttgaattcttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctc |
295 |
Q |
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| T |
6601 |
gtatgatctgatgttctttgcacaactcaacttcttggaagtgttgcaaaaaccttactagttttgtacgttaacaaaaatggtgactgtgataagtctc |
6502 |
T |
|
| Q |
296 |
tgctatgtttcacaaactataccgttgaagaacgcacaatctctagatggagtccagaacaatgccgtgaaagatccatatagacatttcatattcttaa |
395 |
Q |
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|| ||||||| ||||| |||||| | ||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| ||| |||||| |
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| T |
6501 |
tgttatgtttgacaaattataccatcgaagaacgcacaatctccagatggagtccagagcaatggcgttaaagatccatatagacatgccatgatcttaa |
6402 |
T |
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| Q |
396 |
ttttattattattattccctttctgcata |
424 |
Q |
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| T |
6401 |
tattattattgttattccctttctgcata |
6373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 10016 - 10097
Alignment:
| Q |
230 |
ttggaagtgttgcgaaaaccttattagttttgtagattaacaaaaatgttcacagtgatgagtctctgctatgtttcacaaa |
311 |
Q |
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||||||||||||| ||||||||| |||||||||| |||||||||||| | |||||||| |||||||| ||||||| ||||| |
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| T |
10016 |
ttggaagtgttgcaaaaaccttactagttttgtacgttaacaaaaatggtgacagtgataagtctctgttatgtttgacaaa |
10097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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