View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8104_high_4 (Length: 356)
Name: NF8104_high_4
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37975799 - 37976023
Alignment:
| Q |
1 |
aagggcattgaaagtttgatgtctacctgtcaataaattccctttgcagctcttttgcttgaaccagcttggaaagcagcatacggtacacatccaagtc |
100 |
Q |
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| T |
37975799 |
aagggcattgaaagtttgatgtctacctgtcaataaattccctttgcagctcttttgcttgaaccagcttggaaagcagcatacggtacacatccaagtc |
37975898 |
T |
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| Q |
101 |
ccgatcgacgcttcttttgtcgatgttcaaagccgcacaaagctgttatattgacaccaaagattaactatcataaatcctacaaacattcataaagatg |
200 |
Q |
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| T |
37975899 |
ccgatcaacgcttcttttgtcgatgttcaaagccgcacaaagctgttatattgacaccaaagattaactatcataaatcctacaaacattcataaagatg |
37975998 |
T |
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| Q |
201 |
catgtaatagacacgtctatagtat |
225 |
Q |
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| T |
37975999 |
catgtaatagacacgtctatagtat |
37976023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 37976022 - 37976085
Alignment:
| Q |
277 |
atcacttcaaactactttattggaacttctagaggttgttaaaataagaactagaccttatagg |
340 |
Q |
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| T |
37976022 |
atcacttcaaactactttattggaacttctagaggttgttaaaataagaactagaccttatagg |
37976085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 15980211 - 15980362
Alignment:
| Q |
5 |
gcattgaaagtttgatgtctacctgtcaataaattccctttgcagctcttttgcttgaaccagcttggaaagcagcatacggtacacatccaagtcccga |
104 |
Q |
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| T |
15980211 |
gcattgcaaggtttatgtttacctgtcgatgtattcctttagcagctctttagcttgtaccaacttagaaagtagattgcgatacacgtccaaatctcga |
15980310 |
T |
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| Q |
105 |
tcgacgcttcttttgtcgatgttcaaagccgcacaaagctgttatattgaca |
156 |
Q |
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| T |
15980311 |
tcaacactttttttgttgatattcaaagccgaacaaagctgttgaattgaca |
15980362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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