View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8104_high_9 (Length: 235)
Name: NF8104_high_9
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 33460905 - 33461027
Alignment:
| Q |
99 |
ataacgattcgtttctagatgcaacaaaacaagacaacaacaaaa-aagtctcaaatgctttaatcaattcaatactaacaggttaataaaagaaatcat |
197 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33460905 |
ataatgattcgtttctagatgcaacaaaacaagacaacaacaaaaaaagtctcaaatgctttaatcaattcaatactaacatgttaataaaagaaatcat |
33461004 |
T |
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| Q |
198 |
aatggacacatgatacgtatttt |
220 |
Q |
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| T |
33461005 |
aatggacacatgatacgtatttt |
33461027 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 33460767 - 33460881
Alignment:
| Q |
1 |
aatatagaatcgaatttcccttagtgtcccataactcacgg-gacaaggtnnnnnnnnnnnncaatttgttgaaaccaaaaatagtcccaaataagagaa |
99 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33460767 |
aatatagaatcgaatttccctttgtgtcccataactaacggtgacaaggtaaaaataaaaaacaatttgttgaaaccaaaaatagtcccaaataagagaa |
33460866 |
T |
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| Q |
100 |
taacgattcgtttct |
114 |
Q |
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||| ||||||||||| |
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| T |
33460867 |
taatgattcgtttct |
33460881 |
T |
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