View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8104_low_11 (Length: 259)
Name: NF8104_low_11
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_low_11 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] chr6 (7 HSPs) |
| |
|
| [»] scaffold1028 (2 HSPs) |
| |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
| [»] scaffold0631 (4 HSPs) |
| |
|
| [»] scaffold0582 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
| [»] scaffold0150 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 19713893 - 19714158
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19713893 |
gtaaaatagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatatttatgcaaatgatgcatgagatgcaacttgaccatg |
19713992 |
T |
|
| Q |
101 |
atccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaa |
200 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
19713993 |
atccggatatcgccccaattagcacaagaataaatcgccctttcggcacataataaatggccctctcggcacaagagtaaatcgcccttacggcaccaaa |
19714092 |
T |
|
| Q |
201 |
gtaaatcgccgttacggcacataataaat-------taggcacaagagtaaatcgcccttacggca |
259 |
Q |
| |
|
|||||||||| |||| ||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
19714093 |
gtaaatcgcccttacagcacataataaatggccctctcggcacaagagtaaatcgcccttacggca |
19714158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 19704299 - 19704564
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19704299 |
gtaaaacagtcaccacataagagtcaaaggctcgatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatg |
19704398 |
T |
|
| Q |
101 |
atccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaa |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
19704399 |
atccggatatcaccccaattgacacaagaataaatcgccctttcggcacataataaatggccctctcggcacaagagtaaatcgcccttacgacaccaaa |
19704498 |
T |
|
| Q |
201 |
gtaaatcgccgttacggcacataataaat-------taggcacaagagtaaatcgcccttacggca |
259 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
19704499 |
gtaaatcgcccttacggcacataataaatggccctctcggcacaagagtaaatcgcccttaaggca |
19704564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 19714094 - 19714183
Alignment:
| Q |
131 |
taaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacggcac |
220 |
Q |
| |
|
||||| |||||| | |||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
19714094 |
taaatcgcccttacagcacataataaatggccctctcggcacaagagtaaatcgcccttacggcaccagagtaaatcgcccttacggcac |
19714183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 19704500 - 19704578
Alignment:
| Q |
131 |
taaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgc |
209 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19704500 |
taaatcgcccttacggcacataataaatggccctctcggcacaagagtaaatcgcccttaaggcaccaaagtaaatcgc |
19704578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 22404484 - 22404436
Alignment:
| Q |
76 |
atgcatgagatgcaacttgaccatgatccggatattgccccaattggca |
124 |
Q |
| |
|
|||||||| |||||| | || |||||||||||||| ||||||||||||| |
|
|
| T |
22404484 |
atgcatgaaatgcaaatagagcatgatccggatatcgccccaattggca |
22404436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 22625676 - 22625411
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22625676 |
gtaaaacactcaccacataagagtcaaaagctcaatacaaataacagaaatcaaaatacgatttttatgcaaatgatgcatgagatgcaacttgaccatg |
22625577 |
T |
|
| Q |
101 |
atccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
22625576 |
atccggatatcgccccaattggcacaagaataaatcgccctttcggcacataataaatggccttctcggcacaagagtaaatcgcccttacggcaccaaa |
22625477 |
T |
|
| Q |
201 |
gtaaatcgccgttacggcacataataaat-------taggcacaagagtaaatcgcccttacggca |
259 |
Q |
| |
|
|||||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
22625476 |
gtaaatcgcccttacggcacataataaatggccctctcggcacaagagtaaatcgctcttacggca |
22625411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 39 - 259
Target Start/End: Original strand, 29954995 - 29955222
Alignment:
| Q |
39 |
aaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatgatccggatattgccccaattggcacaagaataaattgc |
138 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
29954995 |
aaataatagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatgatccggatatcgccccaattggcacaagaataaatcgc |
29955094 |
T |
|
| Q |
139 |
cctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacggcacataataaat-------ta |
231 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
29955095 |
cctttcggcacataataaatggccctctcggcacaagagtaaatcgcccttacggcaccaaagtaaatcgcccttacggcacataataaatggccctctc |
29955194 |
T |
|
| Q |
232 |
ggcacaagagtaaatcgcccttacggca |
259 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29955195 |
ggcacaagagtaaatcgcccttacggca |
29955222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 12492407 - 12492217
Alignment:
| Q |
3 |
aaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatgat |
102 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12492407 |
aaaacactcaccacataagagtcaaaagctcaatacaaataa-ataaatataaatacgatctttatgcaaatgatgcatgagatgcaactagaccatgat |
12492309 |
T |
|
| Q |
103 |
ccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcac |
196 |
Q |
| |
|
| |||||| ||||||||| |||||||||||||| |||| |||||||||||||||||| |||||| |||| | ||||||||||||||||||||| |
|
|
| T |
12492308 |
ctggatatcgccccaattagcacaagaataaatcgcccgttcggcacataataaatggccctctcggcaca--agtaaatcgcccttacggcac |
12492217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 29955158 - 29955247
Alignment:
| Q |
131 |
taaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacggcac |
220 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
29955158 |
taaatcgcccttacggcacataataaatggccctctcggcacaagagtaaatcgcccttacggcaccagagtaaatcgcccttacggcac |
29955247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 12492235 - 12492157
Alignment:
| Q |
131 |
taaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgc |
209 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12492235 |
taaatcgcccttacggcacataataaatggccctctcggcacaagagtaaatcgcccttacggcaccaaagtaaatcgc |
12492157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 22625475 - 22625390
Alignment:
| Q |
131 |
taaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacg |
216 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||| |||| ||||||||||||| |||||||||||| | ||||||||| ||||| |
|
|
| T |
22625475 |
taaatcgcccttacggcacataataaatggccctctcggcacaagagtaaatcgctcttacggcaccagactaaatcgcccttacg |
22625390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 21857947 - 21857900
Alignment:
| Q |
65 |
ttatgcaaatgatgcatgagatgcaacttgaccatgatccggatattg |
112 |
Q |
| |
|
||||| ||||||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
21857947 |
ttatgtaaatgatgcataatatgcaactagaccatgatccggatattg |
21857900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 10051283 - 10051065
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatg |
100 |
Q |
| |
|
|||| ||| |||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10051283 |
gtaagacactcaccagataagagtcaaaagctcaatacaaataacagaaatcaaaatacgatttttatgcaaatgatgcatgagatgcaacttgaccatg |
10051184 |
T |
|
| Q |
101 |
atccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| | |
|
|
| T |
10051183 |
atccggatatcgccccaattggcacaagaataaattgccctttcggcacataataaatgt-cctctcggcacaagagtaaatcgcccttacggcaccaga |
10051085 |
T |
|
| Q |
201 |
gtaaatcgccgttacggcac |
220 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
10051084 |
gtaaatcgcccttacggcac |
10051065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 3415498 - 3415697
Alignment:
| Q |
10 |
tcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatgatccggata |
109 |
Q |
| |
|
||||||||||| ||||||| || |||| |||||| | |||| ||||| | ||||||| |||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
3415498 |
tcaccacataaaagtcaaaagccaaatataaataa-ataaatagaaatataaactttatgtgaatgatgcatgaaatgcaactagactatgatccggata |
3415596 |
T |
|
| Q |
110 |
ttgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgc |
209 |
Q |
| |
|
| || ||||||| | ||||||||||| |||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3415597 |
tcgctccaattgacgcaagaataaatcgcccgttcggcacataataaatcgccctctcggcacaagagtaaatcgcccttacggcaccagagtaaatcgc |
3415696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 40888091 - 40888140
Alignment:
| Q |
75 |
gatgcatgagatgcaacttgaccatgatccggatattgccccaattggca |
124 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
40888091 |
gatgcatgaaatgcaaacagaccatgatccggatatcgccccaattggca |
40888140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 65617 - 65421
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
65617 |
gtaaaacactcaccacataagagtcaaaagctcaatacaaataacataaatcaaaatacgatttttatgcaaatgatgcatgagatgcaacttgaccatg |
65518 |
T |
|
| Q |
101 |
atccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcacc |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
65517 |
atccggatatcgccccaattggcacaagaataaatcgccctttcggcacataataaatggccctctcggcacaagagtaaatcgcccttacggcacc |
65421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 9272961 - 9272865
Alignment:
| Q |
120 |
tggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacg |
216 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| |||| | |||| |||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
9272961 |
tggcacaagaataaatcgcccgttcggcacataataaatcgccctttcggcacaagagtaaatcgcccttacggcaccagagtaaatcgcccttacg |
9272865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9273016 - 9272973
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataa |
44 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9273016 |
gtaaatcactcaccacataagagtcaaaggctcaatacaaataa |
9272973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 9272883 - 9272841
Alignment:
| Q |
174 |
agagtaaatcgcccttacggcaccaaagtaaatcgccgttacg |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
9272883 |
agagtaaatcgcccttacgtcaccaaagtaaatctcccttacg |
9272841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 46002220 - 46002269
Alignment:
| Q |
75 |
gatgcatgagatgcaacttgaccatgatccggatattgccccaattggca |
124 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
46002220 |
gatgcatgaaatgcaactagaccatgatctagatatcgccccaattggca |
46002269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1028 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: scaffold1028
Description:
Target: scaffold1028; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 1502 - 1231
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatg-------catgagatgcaactt |
93 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1502 |
gtaaaacactcaccacataagagtcaaaagctcaatacaaataa-ataaatataaatacgatctttatgcaaatgatgaatgatgcatgagatgcaactt |
1404 |
T |
|
| Q |
94 |
gaccatgatccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacgg |
193 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
1403 |
gaccatgattcggatatcgccccaattggcacaagaataaatcgccctttcggcacctaataaatgtccctctcggcacaagagtaaatcgcccttacgg |
1304 |
T |
|
| Q |
194 |
caccaaagtaaatcgccgttacggcacataataaat-------taggcacaagagtaaatcgcccttacggca |
259 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
1303 |
cacgaaagtaaatcgcccttacggcacataataaatggccctctcggcagaagagtaaatcgcccttacggca |
1231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1028; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 1295 - 1206
Alignment:
| Q |
131 |
taaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacggcac |
220 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
1295 |
taaatcgcccttacggcacataataaatggccctctcggcagaagagtaaatcgcccttacggcaccatagtaaatcacccttacggcac |
1206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 75965 - 76183
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
75965 |
gtaaaacactcaccacataagagtcaaaggctcgatacaaataacagaaataaaaatacgatctttatgcaaatgatggatgagatgcaacttgaccatg |
76064 |
T |
|
| Q |
101 |
atccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | || ||||||||||||||||| |||||| |||| |||||||||||||| || |||||||| | |
|
|
| T |
76065 |
atccggatatcgccccaattggcacaagaataaatcgtccgttcggcacataataaatcgccctctcggcacaagagtaaatcgccgtttcggcaccaga |
76164 |
T |
|
| Q |
201 |
gtaaatcgccgttacggca |
219 |
Q |
| |
|
|||||||||| || ||||| |
|
|
| T |
76165 |
gtaaatcgccctttcggca |
76183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24499362 - 24499580
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatg |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24499362 |
gtaagacactcaccacataagagtcaaaagctcaatacaaataacagaaatcaaaatacaat-tttatgcaattgatgcatgagatgcaacttgaccatg |
24499460 |
T |
|
| Q |
101 |
atccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| || ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
24499461 |
atccggatatcgccccaattggcacaagaataaatcgccctttcggctcataataaattgccttctctgcacaagagtaaatcgcccttacggcaccaaa |
24499560 |
T |
|
| Q |
201 |
gtaaatcgccgttacggcac |
220 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
24499561 |
gtaaatcgcccttacggcac |
24499580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 24499560 - 24499604
Alignment:
| Q |
176 |
agtaaatcgcccttacggcaccaaagtaaatcgccgttacggcac |
220 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
24499560 |
agtaaatcgcccttacggcaccaaagaaaatcgcccttacggcac |
24499604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 9884418 - 9884369
Alignment:
| Q |
75 |
gatgcatgagatgcaacttgaccatgatccggatattgccccaattggca |
124 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
9884418 |
gatgcatgaaatgcaaatagaccatgatccggatatcgccccaattggca |
9884369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 42076991 - 42077039
Alignment:
| Q |
76 |
atgcatgagatgcaacttgaccatgatccggatattgccccaattggca |
124 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
42076991 |
atgcatgaaatgcaaacagaccatgatccggatatcgccccaattggca |
42077039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 20600895 - 20601112
Alignment:
| Q |
2 |
taaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatga |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20600895 |
taaaacactcaccacataagagtcaaaggctcaatgcaaataa-ataaatataaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatga |
20600993 |
T |
|
| Q |
102 |
tccggatattgccccaattggcacaagaataaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaag |
201 |
Q |
| |
|
||| ||||| |||||||||| ||||||||||||| | | ||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||| || |
|
|
| T |
20600994 |
tccagatatcgccccaattgacacaagaataaatcgtctgttcggcacataataaatcgccctctcggcacaagagtaaatcgccctttcggcaccagag |
20601093 |
T |
|
| Q |
202 |
taaatcgccgttacggcac |
220 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
20601094 |
taaatcgcctttacggcac |
20601112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 2269042 - 2269156
Alignment:
| Q |
10 |
tcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatgatccggata |
109 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
2269042 |
tcaccacataaaagtgaaaatctcaatacaaataacagaaactaaaatactaactttatgcaaatgatgcatgagatgcaactagaccatgatcaggata |
2269141 |
T |
|
| Q |
110 |
ttgccccaattggca |
124 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2269142 |
gcgccccaattggca |
2269156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 11917677 - 11917730
Alignment:
| Q |
71 |
aaatgatgcatgagatgcaacttgaccatgatccggatattgccccaattggca |
124 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11917677 |
aaatgatgcatgacatgcaacttgaccatgatctagatatcgccccaattggca |
11917730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 13379545 - 13379594
Alignment:
| Q |
75 |
gatgcatgagatgcaacttgaccatgatccggatattgccccaattggca |
124 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
13379545 |
gatgcatgaaatgcaaatagaccatgatccggatatcgccccaattggca |
13379594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 20601090 - 20601126
Alignment:
| Q |
174 |
agagtaaatcgcccttacggcaccaaagtaaatcgcc |
210 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
20601090 |
agagtaaatcgcctttacggcaccagagtaaatcgcc |
20601126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 4810 - 4675
Alignment:
| Q |
131 |
taaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacggcacataataaat- |
229 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
4810 |
taaatcgcccttacggcacataataaatggccctctcggcacaagagtaaatcgcccttacggcaccaaagtaaatcgcccttacagcacataataaatg |
4711 |
T |
|
| Q |
230 |
------taggcacaagagtaaatcgcccttacggca |
259 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
4710 |
gccctctcggcacaagagtaaatcgcccttacggca |
4675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 4970 - 4816
Alignment:
| Q |
1 |
gtaaaacagtcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatga-------tgcatgagatgcaactt |
93 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||| | |||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
4970 |
gtaaaacactcaccacataagagtcaaaagctcaatacaaataa-ataaatataaatacgattcttatgcaaatgaggaatgatgcatgagatgcaactt |
4872 |
T |
|
| Q |
94 |
gaccatgatccggatattgccccaattggcacaagaataaattgccctttcggcac |
149 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| |||||| |||||| |
|
|
| T |
4871 |
gaccatgatccggatatcgcctcaattggcacaagaataaatcgcccttacggcac |
4816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 4739 - 4650
Alignment:
| Q |
131 |
taaattgccctttcggcacataataaatgtccctctaggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacggcac |
220 |
Q |
| |
|
||||| |||||| | |||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
4739 |
taaatcgcccttacagcacataataaatggccctctcggcacaagagtaaatcgcccttacggcaccagagtaaatcgcccttacggcac |
4650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 4844 - 4746
Alignment:
| Q |
168 |
ggcaaaagagtaaatcgcccttacggcaccaaagtaaatcgccgttacggcacataataaat-------taggcacaagagtaaatcgcccttacggca |
259 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
4844 |
ggcacaagaataaatcgcccttacggcaccaaagtaaatcgcccttacggcacataataaatggccctctcggcacaagagtaaatcgcccttacggca |
4746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 31095077 - 31094939
Alignment:
| Q |
10 |
tcaccacataagagtcaaaggctcaatacaaataacagaaattaaaatacgatctttatgcaaatgatgcatgagatgcaacttgaccatgatccggata |
109 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||| | |||| ||||| | |||||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
31095077 |
tcaccacataaaagtcaaaagccaaatacaaataa-ataaatagaaatataaactttatgcggatgatgcatgagatgcacctagaccatgatccggata |
31094979 |
T |
|
| Q |
110 |
ttgccccaattggcacaagaataaattgccctttcggcac |
149 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31094978 |
tcgccccaattggcacaagaataaatcgccctttcggcac |
31094939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 31094929 - 31094887
Alignment:
| Q |
178 |
taaatcgcccttacggcaccaaagtaaatcgccgttacggcac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
31094929 |
taaatcgcccttacggcaccaaagtaaatcgccctttcggcac |
31094887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0582 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0582
Description:
Target: scaffold0582; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 9494 - 9540
Alignment:
| Q |
173 |
aagagtaaatcgcccttacggcaccaaagtaaatcgccgttacggca |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
9494 |
aagagtaaatcgcccttacggcaccagagtaaatcgcccttacggca |
9540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 147937 - 147986
Alignment:
| Q |
75 |
gatgcatgagatgcaacttgaccatgatccggatattgccccaattggca |
124 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
147937 |
gatgcatgagatgcaagtagaccatgatccggatatcgccccaattggca |
147986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 35305 - 35351
Alignment:
| Q |
75 |
gatgcatgagatgcaacttgaccatgatccggatattgccccaattg |
121 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
35305 |
gatgcatgagatgcaagtagaccatgatccggatatcgccccaattg |
35351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 2691 - 2646
Alignment:
| Q |
76 |
atgcatgagatgcaacttgaccatgatccggatattgccccaattg |
121 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
2691 |
atgcatgaaatgcaaatagaccatgatccggatatcgccccaattg |
2646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University