View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8104_low_12 (Length: 243)

Name: NF8104_low_12
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8104_low_12
NF8104_low_12
[»] chr2 (2 HSPs)
chr2 (77-230)||(36658351-36658504)
chr2 (77-230)||(29463728-29463885)
[»] chr4 (4 HSPs)
chr4 (87-230)||(48665780-48665928)
chr4 (80-230)||(45892726-45892880)
chr4 (84-230)||(21801287-21801438)
chr4 (77-176)||(12583337-12583437)
[»] scaffold0219 (1 HSPs)
scaffold0219 (77-230)||(5975-6133)
[»] chr3 (1 HSPs)
chr3 (77-223)||(5999965-6000114)
[»] chr7 (3 HSPs)
chr7 (77-230)||(26470191-26470351)
chr7 (77-230)||(26546631-26546791)
chr7 (78-223)||(23773364-23773516)
[»] scaffold0527 (2 HSPs)
scaffold0527 (77-230)||(3366-3524)
scaffold0527 (77-230)||(11429-11587)
[»] chr6 (1 HSPs)
chr6 (78-230)||(23661241-23661398)
[»] chr1 (1 HSPs)
chr1 (78-230)||(16178735-16178892)
[»] chr5 (1 HSPs)
chr5 (87-230)||(32538083-32538232)
[»] chr8 (2 HSPs)
chr8 (79-122)||(923720-923763)
chr8 (183-227)||(923800-923844)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 36658351 - 36658504
Alignment:
Q  77 cgtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagtt 176  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  36658351 cgtggagatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttaagtctgattttctggattgaaggtatgggttctttagtt 36658450  T
Q  177 ctagcattgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36658451 ctagcattgttggatgcatagctcgattcaacatgactggttttatcctgatgt 36658504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 29463728 - 29463885
Alignment:
Q  77 cgtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagtt 176  Q
    |||||| || |||||||||||   |||||||||| |||| ||||||  | | || ||||||| | ||  ||||||||||||||   ||||||||||||||    
T  29463728 cgtggagataaagatgggtggcagctttgtttcgtctctctgatttgatctaaatatcttgaatttg-gtttctggattgaagatctgggttctttagtt 29463826  T
Q  177 ctagca-----ttgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
     |||||     |||||||||||||| || ||||||||||||||| ||||||||| ||||    
T  29463827 ttagcattgttttgttggatgcatatctcgattcaacatgactgattttatcctaatgt 29463885  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 48665780 - 48665928
Alignment:
Q  87 aagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagttctagcat--- 183  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||  |||||||||||||| | ||||||||||||||||| || |       
T  48665780 aagatgggtggtgactttgtttccactctgtcattttgtctgaaaatcttgattcttgttttctggattgaaagtatgggttctttagttctggctttgt 48665879  T
Q  184 --tgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
      |||||||||||||||| ||||||||||||||||||||||||||||||    
T  48665880 tctgttggatgcatagctcgattcaacatgactggttttatcctgatgt 48665928  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 45892880 - 45892726
Alignment:
Q  80 ggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagttcta 179  Q
    |||||||||||||| |||||||||||||||| |  |||||||| || |||||||||||| |||| ||||||||||| |||| |||||||||||||||||     
T  45892880 ggaaatgaagatggatggtgactttgtttcggcaatgtgattt-gtctgaaaatcttgaatctggttttctggattaaaggtatgggttctttagttctg 45892782  T
Q  180 gcat-----tgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    || |     ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  45892781 gcgttgttctgttggatgcatatcttgattcaacatgtctggttttatcctgatgt 45892726  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 21801287 - 21801438
Alignment:
Q  84 atgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagttctagcat 183  Q
    ||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||| |||  ||||||||||||||| ||  |||||||||||||| |  |    
T  21801287 atgaagatgggtgatgactttatttcggctctgtgattttgtctgaaaatcttgaatcttgttttctggattgaagacacaggttctttagttctggtgt 21801386  T
Q  184 tg-----ttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    ||     ||||||||||| || |||| |||||||||||||||||||||||||    
T  21801387 tgttctattggatgcatatctcgatttaacatgactggttttatcctgatgt 21801438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 12583437 - 12583337
Alignment:
Q  77 cgtggaaatgaagatggg-tggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagt 175  Q
    |||||| ||||||||||| |||| ||||||||||| |||||||||||||| |||||||| ||| |||| ||||||||||| |||  ||||||||||||||    
T  12583437 cgtggagatgaagatggggtggttactttgtttcggctctgtgattttgtctgaaaatcatgaatctggttttctggattaaagatatgggttctttagt 12583338  T
Q  176 t 176  Q
    |    
T  12583337 t 12583337  T

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Target: scaffold0219 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 6133 - 5975
Alignment:
Q  77 cgtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagtt 176  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||| |||||||||||  ||    
T  6133 cgtggaaatgaagatgggtggtgactttgtttcggctctgtgattttgtctgaaaatcttgaatctggttttctggattgaaggtatgggttctttcatt 6034  T
Q  177 ct-----agcattgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    ||      |   ||||||||||||| || |||||||||||||||||| |||||||||||    
T  6033 ctggtgctgttatgttggatgcatatctcgattcaacatgactggttgtatcctgatgt 5975  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 6000114 - 5999965
Alignment:
Q  77 cgtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagtt 176  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| || |||| |||| ||||||||||  |||||||||||||||    
T  6000114 cgtggaaatgaagatgggtggtgactttgtttcggctctgtgattttgtctaaaaatctcgaatctggttttttggattgaagatatgggttctttagtt 6000015  T
Q  177 ctag---cattgttggatgcatagcttgattcaacatgactggttttatc 223  Q
    || |   | ||| |||||||||| || |||||||||||||||||||||||    
T  6000014 ctggcttctttgatggatgcatatctcgattcaacatgactggttttatc 5999965  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 26470191 - 26470351
Alignment:
Q  77 cgtggaaatgaagatgggtggtgactttgtttcgactctgtga--ttttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttag 174  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||| |||  ||||||||| |||| |||||||||||||||  |||||||||||||    
T  26470191 cgtggaaatgaagatgggtggtgactttgtttcgactatgtgattttttttttttaaatcttgaatctggttttctggattgaagatatgggttctttag 26470290  T
Q  175 ttctagca-----ttgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    || | |||     |||||||||||||| || ||||||||||||||||||||||||| ||||    
T  26470291 ttttggcattcttttgttggatgcatatctcgattcaacatgactggttttatcctaatgt 26470351  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 26546631 - 26546791
Alignment:
Q  77 cgtggaaatgaagatgggtggtgactttgtttcgactctgtga--ttttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttag 174  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||| |||  ||||||||| |||| |||||||||||||||  |||||||||||||    
T  26546631 cgtggaaatgaagatgggtggtgactttgtttcgactatgtgattttttttttttaaatcttgaatctggttttctggattgaagatatgggttctttag 26546730  T
Q  175 ttctagca-----ttgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    || | |||     |||||||||||||| || ||||||||||||||||||||||||| ||||    
T  26546731 ttttggcattcttttgttggatgcatatctcgattcaacatgactggttttatcctaatgt 26546791  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 23773364 - 23773516
Alignment:
Q  78 gtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctgga-ttgaaggcatggg-ttctttagt 175  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||| | |||||||||| |||| ||||||||| ||||||  ||||| || ||||||    
T  23773364 gtggaaatgaagatgagtggtgaatttgtttcggctctgtgattttgtctaaaaatcttgaatctggttttctggatttgaagatatgggtttttttagt 23773463  T
Q  176 tctagca-----ttgttggatgcatagcttgattcaacatgactggttttatc 223  Q
    ||| |||     |||||||||||||| || |||||||||||||||||||||||    
T  23773464 tctggcattgttttgttggatgcatatctcgattcaacatgactggttttatc 23773516  T

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Target: scaffold0527 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 3524 - 3366
Alignment:
Q  77 cgtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagtt 176  Q
    |||||||||||||||||||||||||||||||||| || || |||||||| | |||||||||| |||| |||||||||||||||| |||||||| ||| ||    
T  3524 cgtggaaatgaagatgggtggtgactttgtttcggctatgagattttgtctaaaaatcttgaatctggttttctggattgaaggtatgggttccttaatt 3425  T
Q  177 ctagcat-----tgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    || |  |     ||||||||||||| ||  |||||||||||||||||||||||||||||    
T  3424 cttgtgttgttatgttggatgcatatctctattcaacatgactggttttatcctgatgt 3366  T

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Target: scaffold0527; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 11587 - 11429
Alignment:
Q  77 cgtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagtt 176  Q
    |||||||||||||||||||||||||||||||||| || || |||||||| | |||||||||| |||| |||||||||||||||| |||||||| ||| ||    
T  11587 cgtggaaatgaagatgggtggtgactttgtttcggctatgagattttgtctaaaaatcttgaatctggttttctggattgaaggtatgggttccttaatt 11488  T
Q  177 ctagcat-----tgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    || |  |     ||||||||||||| ||  |||||||||||||||||||||||||||||    
T  11487 cttgtgttgttatgttggatgcatatctctattcaacatgactggttttatcctgatgt 11429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 23661241 - 23661398
Alignment:
Q  78 gtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagttc 177  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||| |||| |||| ||||||||||||||   ||||||||||||||||    
T  23661241 gtggaaatgaagatgggtggtgaatttgtttcggctatgtgattttgtctgaaaatattgaatctggttttctggattgaatatatgggttctttagttc 23661340  T
Q  178 tagcattgtt-----ggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
    | |  |||||     |||| |||| || ||||||||||||||||||||||||||||||    
T  23661341 tggtgttgttctgtaggattcatatctcgattcaacatgactggttttatcctgatgt 23661398  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 230
Target Start/End: Complemental strand, 16178892 - 16178735
Alignment:
Q  78 gtggaaatgaagatgggtggtgactttgtttcgactctgtgattttgtttgaaaatcttgagtctgattttctggattgaaggcatgggttcttta---- 173  Q
    ||||| |||||||||||||||| |||||||||| || |||||||| || |||||||||||| |||||||||||| ||| | |  ||||||||||||        
T  16178892 gtggagatgaagatgggtggtggctttgtttcggctatgtgatttggtatgaaaatcttgaatctgattttctgaattaatgatatgggttctttattta 16178793  T
Q  174 -gttctagcattgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
     | | | |   ||||||||||||| || ||||||||||||||| ||||||||| ||||    
T  16178792 gggtgttgttctgttggatgcatatctcgattcaacatgactgcttttatcctaatgt 16178735  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 32538232 - 32538083
Alignment:
Q  87 aagatgggtggtgactttgtttcgactctgtgatttt-gtttgaaaatcttgagtctgattttctggattgaaggcatgggttctttagttctagcat-- 183  Q
    |||||||||||||  |||||| || |||||||||||| || |||||||||||| | |||||||  | |||||||  | ||||||||||||| | |  |      
T  32538232 aagatgggtggtggatttgttccggctctgtgattttggtctgaaaatcttgaatttgatttttcgaattgaagatacgggttctttagttatggggttg 32538133  T
Q  184 ---tgttggatgcatagcttgattcaacatgactggttttatcctgatgt 230  Q
       ||||||||||||| || |||||||||| | |||||||||| ||||||    
T  32538132 ttctgttggatgcatatctagattcaacataattggttttatcttgatgt 32538083  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 923720 - 923763
Alignment:
Q  79 tggaaatgaagatgggtggtgactttgtttcgactctgtgattt 122  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||    
T  923720 tggagatgaagatgggtggtggctttgttacgactctgtgattt 923763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 923800 - 923844
Alignment:
Q  183 ttgttggatgcatagcttgattcaacatgactggttttatcctga 227  Q
    ||||||||||||||  | |||||||||||| ||||||||||||||    
T  923800 ttgttggatgcatatttcgattcaacatgattggttttatcctga 923844  T

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