View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8104_low_14 (Length: 242)
Name: NF8104_low_14
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 34584742 - 34584545
Alignment:
| Q |
7 |
atggacatcagcaagtatgagtaaacacacttcaactgaatagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacata |
106 |
Q |
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| T |
34584742 |
atgggcatcagcaagtatgagtaaacactcttcaactgaataaaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacata |
34584643 |
T |
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| Q |
107 |
ttcaaaagcaagagtaaaaatgaatggacatttatatatctaaaaaataacagacattgaatccctctttttaagtcctgttttcttgtacagtccactt |
206 |
Q |
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| T |
34584642 |
tacaaaagcaagagtaaaaatgaatggacatttatatatctaaaaaataacagacattga------ctttttaagtcctgttttcttgaacagtccactt |
34584549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 34586174 - 34586015
Alignment:
| Q |
13 |
atcagcaagtatgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaaga----ttcaagggactcttgacaacata |
106 |
Q |
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| T |
34586174 |
atcagcaagtatgagtaaacacacttcacctgatcataaaagataatttcaaaacaatctattgaagaaaagaaagatttcagggactcta-acaacata |
34586076 |
T |
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| Q |
107 |
ttcaaaagcaagagtaaaaatgaatggacatttatatatctaaaaaataacagacattgaatccctcttttt |
178 |
Q |
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| T |
34586075 |
tacaaaagcaagagtaaaaa-----------ttatataactaaaatataacagactttgaatccctcttttt |
34586015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 34583071 - 34583099
Alignment:
| Q |
214 |
tttttaactcaatttttgccatggcgacc |
242 |
Q |
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| T |
34583071 |
tttttaactcaatttttgccatggcgacc |
34583099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 19179850 - 19179735
Alignment:
| Q |
12 |
catcagcaagtatgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatattc |
109 |
Q |
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|||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||| | |
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| T |
19179850 |
catcagcaagtatgagtaaacacact-caactgctcataaaagacaatttcaaaacaatctatttaagaaaagattcaagggactc-tgacaacatatac |
19179753 |
T |
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| Q |
110 |
aaaagcaagagtaaaaat |
127 |
Q |
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|||||||||||||||||| |
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| T |
19179752 |
aaaagcaagagtaaaaat |
19179735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 1478230 - 1478115
Alignment:
| Q |
12 |
catcagcaagtatgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatattc |
109 |
Q |
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|||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||| | |
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| T |
1478230 |
catcagcaagtatgagtaaacacact-caactgctcataaaagacaatttcaaaacaatctatttaagaaaagattcaagggactc-tgacaacatatac |
1478133 |
T |
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| Q |
110 |
aaaagcaagagtaaaaat |
127 |
Q |
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|||||||||||| ||||| |
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| T |
1478132 |
aaaagcaagagttaaaat |
1478115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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