View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8104_low_3 (Length: 517)

Name: NF8104_low_3
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8104_low_3
NF8104_low_3
[»] chr7 (3 HSPs)
chr7 (3-473)||(3367222-3367692)
chr7 (419-473)||(7710917-7710971)
chr7 (392-468)||(22884134-22884213)
[»] chr4 (5 HSPs)
chr4 (3-473)||(54188134-54188604)
chr4 (3-473)||(8570574-8571034)
chr4 (400-473)||(28462446-28462519)
chr4 (407-449)||(2550261-2550303)
chr4 (112-178)||(5992026-5992091)
[»] chr3 (3 HSPs)
chr3 (3-473)||(28696534-28696994)
chr3 (402-473)||(23361689-23361760)
chr3 (267-307)||(7488970-7489010)
[»] chr6 (3 HSPs)
chr6 (3-119)||(16720019-16720135)
chr6 (400-473)||(7600004-7600077)
chr6 (402-472)||(12038167-12038237)
[»] chr5 (2 HSPs)
chr5 (31-157)||(16450506-16450632)
chr5 (402-473)||(19611250-19611321)
[»] chr2 (1 HSPs)
chr2 (400-473)||(45402102-45402175)
[»] chr8 (3 HSPs)
chr8 (415-464)||(23241019-23241068)
chr8 (388-440)||(7274877-7274929)
chr8 (31-106)||(18391801-18391876)


Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 3 - 473
Target Start/End: Original strand, 3367222 - 3367692
Alignment:
Q  3 aacatttgcaatatttgcaaaaaacttggaaagaaagatgagcattggactatgcacatagtaaaaggaatcattttaaaaccaatcaaagaggaagttt 102  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3367222 aacatttgcaatatttgtaaaaaacttggaaagaaagatgagcattggaccatgcacatagtaaaaggaatcattttaaaaccaatcaaagtggaagttt 3367321  T
Q  103 atacctcaaatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaacagagccaaataattcaaaaacaaag 202  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3367322 atacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaacagaaccaaataattcaaaaacaaag 3367421  T
Q  203 attaagccaccaaatattgtagattaaatggtaaacaacaaaacaaaatagtctcaaaagagaaaacataatttaggaacaaatagcttccttaggcatc 302  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  3367422 attaagccaccaaatatggtagattaaatggtaaacaacaaaacacaatagtctcaaaaggcaaaacataatttaggaacaaatagcttccttaggcatc 3367521  T
Q  303 ataatcccagttgagaaatctataaataagtaaataagcatatgtttttacaaaaagttatacttctaccaaccagtcctctttcctaaataagcacaca 402  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3367522 ataatcccaattgagaaatctataaataagtaaataagcatatgtttttacaaaaagttctacttctaccaaccagtcctctttcctaaataagcacaca 3367621  T
Q  403 attgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3367622 attgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 3367692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 473
Target Start/End: Complemental strand, 7710971 - 7710917
Alignment:
Q  419 aaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||    
T  7710971 aaatttcattgagtcaaattatcaaacacctcatatgcaacacaatcataccttg 7710917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 468
Target Start/End: Complemental strand, 22884213 - 22884134
Alignment:
Q  392 ataagcacacaattgcaaaacac---agtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataata 468  Q
    |||||||||||||||||||| |    ||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||    
T  22884213 ataagcacacaattgcaaaataatagagtaaaatttcattgagtcaaattatcaaacacctcacacgcaacacaataata 22884134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 3 - 473
Target Start/End: Original strand, 54188134 - 54188604
Alignment:
Q  3 aacatttgcaatatttgcaaaaaacttggaaagaaagatgagcattggactatgcacatagtaaaaggaatcattttaaaaccaatcaaagaggaagttt 102  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54188134 aacatttgcaatatttgtaaaaaacttggaaagaaagatgagcattggaccatgcacatagtaaaaggaatcattttaaaaccaatcaaagtggaagttt 54188233  T
Q  103 atacctcaaatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaacagagccaaataattcaaaaacaaag 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  54188234 atacctcagatgccactgttcccatcttggtgcaagccatcaatcacacttaaagtcattggcagatctgcaaacagaaccaaataattcaaaaacaaag 54188333  T
Q  203 attaagccaccaaatattgtagattaaatggtaaacaacaaaacaaaatagtctcaaaagagaaaacataatttaggaacaaatagcttccttaggcatc 302  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  54188334 attaagccaccaaatatggtagattaaatggtaaacaacaaaacacaatagtctcaaaaagcaaaacataatttaggaacaaatagcttccttaggcatc 54188433  T
Q  303 ataatcccagttgagaaatctataaataagtaaataagcatatgtttttacaaaaagttatacttctaccaaccagtcctctttcctaaataagcacaca 402  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  54188434 ataatcccaattgaaaaatctataaataagtaaataagcatatgtttttacaaaaagttctacttctaccaaccagtcatctttcctaaataagcacaca 54188533  T
Q  403 attgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54188534 attgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataataccttg 54188604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 3 - 473
Target Start/End: Complemental strand, 8571034 - 8570574
Alignment:
Q  3 aacatttgcaatatttgcaaaaaacttggaaagaaagatgagcattggactatgcacatagtaaaaggaatcattttaaaaccaatcaaagaggaagttt 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8571034 aacatttgcaatatttgcaaataacttggaaagaaagatgagcattggaccatgcacatagtaaaaggaatcattttaaaaccaatcaaagtggaagttt 8570935  T
Q  103 atacctcaaatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaacagagccaaataattcaaaaacaaag 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  8570934 atacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaa----------taattcaaaaacaaag 8570845  T
Q  203 attaagccaccaaatattgtagattaaatggtaaacaacaaaacaaaatagtctcaaaagagaaaacataatttaggaacaaatagcttccttaggcatc 302  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  8570844 attaagccacctaatatggtagattaaatggtaaacaacaaaacacaatagtctcaaaaggcaaaacataatttaggaacaaatagcttccttaggcatc 8570745  T
Q  303 ataatcccagttgagaaatctataaataagtaaataagcatatgtttttacaaaaagttatacttctaccaaccagtcctctttcctaaataagcacaca 402  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  8570744 ataatcccaattgagaaatctataaataagtaaataagcatatgtttttacaaaaagttctacttctaccatccagtcctctttcctaaataagcacaca 8570645  T
Q  403 attgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  8570644 attgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttg 8570574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 28462446 - 28462519
Alignment:
Q  400 acaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||||||   ||||||||||||||| ||| |||||||||||||  || ||| |||||||||||||||    
T  28462446 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttg 28462519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 2550261 - 2550303
Alignment:
Q  407 caaaacacagtcaaatttcattgagtcaaattatcaaacacct 449  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  2550261 caaaacaaagttaaatttcattgagtcaaattatcaaacacct 2550303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 5992091 - 5992026
Alignment:
Q  112 atgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaaca 178  Q
    |||| |||| ||| |||||||||||||||||||||||| ||||||| | || | |||||||||||||    
T  5992091 atgctactgctccgatcttggtgcaagccatcaatcacacttgaagccctt-gtagatctgcaaaca 5992026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 3 - 473
Target Start/End: Complemental strand, 28696994 - 28696534
Alignment:
Q  3 aacatttgcaatatttgcaaaaaacttggaaagaaagatgagcattggactatgcacatagtaaaaggaatcattttaaaaccaatcaaagaggaagttt 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28696994 aacatttgcaatatttgcaaataacttggaaagaaagatgagcattggaccatgcacatagtaaaaggaatcattttaaaaccaatcaaagtggaagttt 28696895  T
Q  103 atacctcaaatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaacagagccaaataattcaaaaacaaag 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  28696894 atacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaa----------taattcaaaaacaaag 28696805  T
Q  203 attaagccaccaaatattgtagattaaatggtaaacaacaaaacaaaatagtctcaaaagagaaaacataatttaggaacaaatagcttccttaggcatc 302  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  28696804 attaagccacctaatatggtagattaaatggtaaacaacaaaacacaatagtctcaaaaggcaaaacataatttaggaacaaatagcttccttaggcatc 28696705  T
Q  303 ataatcccagttgagaaatctataaataagtaaataagcatatgtttttacaaaaagttatacttctaccaaccagtcctctttcctaaataagcacaca 402  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28696704 ataatcccaattgagaaatctataaataagtaaataagcatatgtttttacaaaaagttctacttctaccaaccagtcctctttcctaaataagcacaca 28696605  T
Q  403 attgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  28696604 attgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttg 28696534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 473
Target Start/End: Complemental strand, 23361760 - 23361689
Alignment:
Q  402 aattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||||   ||||||||||||||| ||| |||||||||||||  || ||| |||||||||||||||    
T  23361760 aattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttg 23361689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 7488970 - 7489010
Alignment:
Q  267 aacataatttaggaacaaatagcttccttaggcatcataat 307  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  7488970 aacataatttaggatcaaataacttccttaggcgtcataat 7489010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 16720135 - 16720019
Alignment:
Q  3 aacatttgcaatatttgcaaaaaacttggaaagaaagatgagcattggactatgcacatagtaaaaggaatcattttaaaaccaatcaaagaggaagttt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16720135 aacatttgcaatatttgcaaaaaacttggaaagaaagatgagcattggaccatgcacatagtaaaaggaatcattttaaaaccaatcaaagtggaagttt 16720036  T
Q  103 atacctcaaatgccact 119  Q
    |||||||| ||||||||    
T  16720035 atacctcagatgccact 16720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 7600077 - 7600004
Alignment:
Q  400 acaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||||||   ||||||||||||||| ||| |||||||||||||  || ||| |||||||||||||||    
T  7600077 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttg 7600004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 472
Target Start/End: Original strand, 12038167 - 12038237
Alignment:
Q  402 aattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataatacctt 472  Q
    |||||||||||| |||||||||||||| ||| |||| ||||||||| | |||  || |||||||| |||||    
T  12038167 aattgcaaaacagagtcaaatttcatttagtaaaatcatcaaacacttcatactcaacacaataacacctt 12038237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 16450632 - 16450506
Alignment:
Q  31 gaaagaaagatgagcattggactatgcacatagtaaaaggaatcattttaaaaccaatcaaagaggaagtttatacctcaaatgccactgttcccatctt 130  Q
    |||||||||||||||||| ||  |||||| | ||||||||| | ||  ||||||| |||||||||||| ||||||||| | || ||||||   |||||||    
T  16450632 gaaagaaagatgagcattagaacatgcacgttgtaaaaggagtaatcctaaaacctatcaaagaggaaatttataccttagattccactgcggccatctt 16450533  T
Q  131 ggtgcaagccatcaatcacgcttgaag 157  Q
    | ||||||| ||||||| | |||||||    
T  16450532 gttgcaagcaatcaatcccacttgaag 16450506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 473
Target Start/End: Complemental strand, 19611321 - 19611250
Alignment:
Q  402 aattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||||   ||||||||||||||| ||| |||||||||||||  || ||| |||||||||||||||    
T  19611321 aattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttg 19611250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 45402175 - 45402102
Alignment:
Q  400 acaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttg 473  Q
    ||||||||||||||   ||||||||||||||| ||| |||||||||||||  || ||| |||||||||||||||    
T  45402175 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttg 45402102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 23241068 - 23241019
Alignment:
Q  415 agtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaat 464  Q
    ||||||||||||||||||||||||||||||||| | ||| ||| ||||||    
T  23241068 agtcaaatttcattgagtcaaattatcaaacacttcatatgcaacacaat 23241019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 7274877 - 7274929
Alignment:
Q  388 ctaaataagcacacaattgcaaaacacagtcaaatttcattgagtcaaattat 440  Q
    ||||||| ||| ||||||| ||||||||||||||||| ||||||| |||||||    
T  7274877 ctaaatacgcatacaattgtaaaacacagtcaaattttattgagtgaaattat 7274929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 18391876 - 18391801
Alignment:
Q  31 gaaagaaagatgagcattggactatgcacatagtaaaaggaatcattttaaaaccaatcaaagaggaagtttatac 106  Q
    |||||||||| ||||||| ||  |||||| ||||||| ||| | || |||||||| |||||||||||| |||||||    
T  18391876 gaaagaaagacgagcattagaacatgcacgtagtaaatggagtaatgttaaaacctatcaaagaggaattttatac 18391801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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