View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8104_low_4 (Length: 500)
Name: NF8104_low_4
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 3073572 - 3074048
Alignment:
| Q |
19 |
tttacaactattattgttattaatattcaccttggtcgccgatgtttcatcaatgtcactaacttgtttctcgatcttgtcattatccacaattgttgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3073572 |
tttacaactattattgttattaatattcaccttggtcgccgatgtttcatcaatgtcactaacttgtttctcgatcttgtcattatccacaattgttgaa |
3073671 |
T |
|
| Q |
119 |
gctttgaactttttatgtaggtgaccatgatcagcaccacgacagttgtgcaagacatatcgaagagtgtatgtgctccattaagatgttcatgatcaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3073672 |
gctttgaactttttatgtaggtgaccatgatcagcaccacgacagttgtgcaagacatatcgaagagtgtatatgctccattaagatgttcatgatcaat |
3073771 |
T |
|
| Q |
219 |
gatatttctcctcttgatagaacgttgattggttttatgggactttggtggcgaataatggttaagtcaattgctgggtgtgcaataccaacttgaaatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3073772 |
gatatttctcctcttgatagaacgttgattggttttatgggactttggtggcgaataatggttaagtcaattgctgggtgtgcaataccaacttgaaatt |
3073871 |
T |
|
| Q |
319 |
taaattgttccacgaatgtggttggagattgaatactcttggaacccttttcatggtgtaatatcatatgtccgcagaaagccttaatggatgaaaaaac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
3073872 |
taaattgttccacgaatgtggttggagattgaatactcttggaacccttttcatggtgcaatatcatatgttcgcagaaagccttaatggatgaaaaaac |
3073971 |
T |
|
| Q |
419 |
tttgttgcaaacaggacaactatgtttctatttttcatcatcgcccttattaatagcatgatcgcgtctctgcttct |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3073972 |
tttgttgcaaacaggacaactatgtttctatttttcatcatcgcccttattaatagcatgatcgcgtctctgtttct |
3074048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 44 - 460
Target Start/End: Original strand, 21155408 - 21155829
Alignment:
| Q |
44 |
ttcaccttggtcgccgatgtttcatcaatgtcactaacttgtttctcgatcttgtcattatccacaattgttgaagctttgaactttttatgtaggtgac |
143 |
Q |
| |
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|||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||| |||| |
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| T |
21155408 |
ttcaccttagtagccggtgtttcatcgatgtcactaacttgtttctcgatcttgtcattatccacattgcttgaagctttgagcttttcatgtagatgac |
21155507 |
T |
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| Q |
144 |
catgatcagcaccacga-cagttgtgcaagacatatcgaagagtgtatgtgctccattaagatgttcatgatcaatgatatttctcctcttgatagaacg |
242 |
Q |
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|||||||| |||||||| ||| | ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |
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| T |
21155508 |
catgatcaccaccacgagcagcagcacaagagatatggaagagtgtatgtgctccattaatttgttcatgatcaatgatatttctcctcctgatagagcg |
21155607 |
T |
|
| Q |
243 |
ttgattggttttatgggactttggt---ggcgaataat-ggttaagtcaattgctgggtgtgcaataccaacttgaaatttaaattgttccacgaatgtg |
338 |
Q |
| |
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|| ||||||||||||||||||||| |||||||| | |||||||||||| ||||| ||||||||| ||||||||||| ||||||||| | | ||||| |
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| T |
21155608 |
tttattggttttatgggactttggcagcggcgaatacttggttaagtcaatcgctggtggtgcaatactaacttgaaattgaaattgttcgaaggatgtg |
21155707 |
T |
|
| Q |
339 |
gttggagattgaatactcttggaacccttttcatggtgtaatatcatatgtccgcagaaagccttaatggatgaaaaaactttgttgcaaacaggacaac |
438 |
Q |
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||||| ||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
21155708 |
gttggcaattgaatactcttcgaacccttttcagagtgcaatatcatatgtctatagaaagccttagtggatgaaaaaaccttgttgcaaacaggacaac |
21155807 |
T |
|
| Q |
439 |
tatgtttctatttttcatcatc |
460 |
Q |
| |
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||| ||||| ||| |||||||| |
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| T |
21155808 |
tatatttctgtttctcatcatc |
21155829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 21078575 - 21078519
Alignment:
| Q |
171 |
agacatatcgaagagtgtatgtgctccattaagatgttcatgatcaatgatatttct |
227 |
Q |
| |
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||||||||| |||||| |||||||| |||||||| ||||||||||||| |||||||| |
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| T |
21078575 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
21078519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 21073805 - 21073751
Alignment:
| Q |
406 |
tggatgaaaaaactttgttgcaaacaggacaactatgtttctatttttcatcatc |
460 |
Q |
| |
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||||||||||||| |||||||||||| |||||| |||||||| ||| |||||||| |
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| T |
21073805 |
tggatgaaaaaaccttgttgcaaacacgacaacaatgtttctgtttctcatcatc |
21073751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 91 - 461
Target Start/End: Original strand, 27732004 - 27732378
Alignment:
| Q |
91 |
gatcttgtcattatccacaattgttgaagctttgaactttttatgtaggtgaccatgatcagcaccacgaca----gttgtgcaagacatatcgaagagt |
186 |
Q |
| |
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||||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||| |||||| || | | ||||||||||| ||||||| |
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| T |
27732004 |
gatcttgtcattatccacattgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt |
27732103 |
T |
|
| Q |
187 |
gtatgtgctccattaagatgttcatgatcaatgatatttctcctcttgatagaacgttgattggttttatgggactttggtggcgaataat-ggttaagt |
285 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||| | |||||||| |
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| T |
27732104 |
gtttgtgctccattaagatgttcatgatcaatgatatttctcctcctgatagattttttttta-ttttatgggactttggtggcgaatacttggttaagt |
27732202 |
T |
|
| Q |
286 |
caattgctgggtgtgcaataccaacttgaaatttaaattgttccacgaatgtggttggagattgaatactcttggaacccttttcatggtgtaatatcat |
385 |
Q |
| |
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|||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
27732203 |
caatagctggtggtgcaataccaacttgaaattgaaattgttccaagaatgtggttggtgaatgaatactcttggaacccttttcatggtgcaatatcat |
27732302 |
T |
|
| Q |
386 |
atgtccgcagaaagccttaatggatgaaaaaactttgttgcaaacaggacaactatgtttctatttttcatcatcg |
461 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||| |
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|
| T |
27732303 |
atgtccgcaaaaagccttgttggatgaaaaaaccttgttgcaaacaggacacctatgtttctgtttctcatcatcg |
27732378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 298 - 460
Target Start/End: Complemental strand, 21249459 - 21249296
Alignment:
| Q |
298 |
gtgcaataccaacttgaaattt-aaattgttccacgaatgtggttggagattgaatactcttggaacccttttcatggtgtaatatcatatgtccgcaga |
396 |
Q |
| |
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|||||||||||||||||||||| ||||| ||| | | ||||||||||||||||| ||||||||| |||||| ||| |||| ||||||||||||||||| | |
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| T |
21249459 |
gtgcaataccaacttgaaatttgaaatttttcaaaggatgtggttggagattgagtactcttgggacccttatcacggtgcaatatcatatgtccgcata |
21249360 |
T |
|
| Q |
397 |
aagccttaatggatgaaaaaactttgttgcaaacaggacaactatgtttctatttttcatcatc |
460 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||| |||||| |||||||| ||| | |||||| |
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|
| T |
21249359 |
aagccttattggatgaaaaaaccttgttgcaaacaagacaaccatgtttctgtttctgatcatc |
21249296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 21249566 - 21249466
Alignment:
| Q |
44 |
ttcaccttggtcgccgatgtttcatcaatgtcactaacttgtttctcgatcttgtcattatccacaattgttgaagctttgaactttttatgtaggtgac |
143 |
Q |
| |
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||||||||||| ||| ||||| ||| |||||||| |||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||| |
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| T |
21249566 |
ttcaccttggttgccaatgttacattaatgtcaccaacttgtttctcgatcttttcattatccacattgcttgaagctttgagctttttatgtaggtgac |
21249467 |
T |
|
| Q |
144 |
c |
144 |
Q |
| |
|
| |
|
|
| T |
21249466 |
c |
21249466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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