View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8104_low_7 (Length: 383)
Name: NF8104_low_7
Description: NF8104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8104_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 151 - 327
Target Start/End: Original strand, 38185035 - 38185208
Alignment:
| Q |
151 |
taatataaacatttatactagtnnnnnnnttgaaacttaaaacaaggattttgttgatctaatggtcgaaacgaccttgaccctacaacgagaccttcaa |
250 |
Q |
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| T |
38185035 |
taatataaacatttatactagtaaaaaaattgaaacttaaaacaaggattttgttggt-ta--ggtcgaaacgaccttgaccctacaacgagaccttcaa |
38185131 |
T |
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| Q |
251 |
ctcaattgcacacctaaagcagtaagtcgtcgtaggcttgaaactcaagtttccgatattgcacttgcattgtgcaa |
327 |
Q |
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| T |
38185132 |
ctcaattgcacacctaaagcagtaagtcgtcgtaggcttgaaactcaagtttccgatattgcacttgcattgtgcaa |
38185208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 38183976 - 38184058
Alignment:
| Q |
1 |
tgaaaccccgatatataaaaaatgatgaaatattgtgtcagataccgatattcgcccaatacgtttttgtgcgtatggagaaa |
83 |
Q |
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| T |
38183976 |
tgaaaccccgatatataaaaaatgatgaaatattgtgtccgataccgatattcgcccaatacgttttggtgcgtatggagaaa |
38184058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 180 - 327
Target Start/End: Original strand, 38190829 - 38190973
Alignment:
| Q |
180 |
ttgaaacttaaaacaaggattttgttgatctaatggtcgaaacgaccttgaccctacaacgagaccttcaactcaattgcacacctaaagcagtaagtcg |
279 |
Q |
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| T |
38190829 |
ttgaaacttaaagcaaggactttgttggtataatggtcgagatggccttaaccctacaacgagaccttcaactcgattgcacacctaaggtaataa---g |
38190925 |
T |
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| Q |
280 |
tcgtaggcttgaaactcaagtttccgatattgcacttgcattgtgcaa |
327 |
Q |
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| T |
38190926 |
tcttatgcttgaaacacaagtttcctacattgcactctcattgtgcaa |
38190973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 38184121 - 38184171
Alignment:
| Q |
110 |
ttgtctgataaatctgcgataaggttggtttgtacttgagataatataaac |
160 |
Q |
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| T |
38184121 |
ttgtctgataaatttgcgataaggttggtttgtacttgatataatataaac |
38184171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 356
Target Start/End: Original strand, 38185252 - 38185283
Alignment:
| Q |
325 |
caaacaccaccttccatcagttacaactccaa |
356 |
Q |
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| T |
38185252 |
caaacaccaccttccatcagttacaactccaa |
38185283 |
T |
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