View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8105_high_1 (Length: 381)
Name: NF8105_high_1
Description: NF8105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8105_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 16993081 - 16992734
Alignment:
| Q |
17 |
catcaaagcggagaaagagtgatgaagaagataagggtttggaatatgtttctggttctnnnnnnngaaagatgactgaagaaccttttgttgttcctgc |
116 |
Q |
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| T |
16993081 |
catcaaagcggagaaagagtgatgaagaagataagggtttggaatatgtttctggttctaaaaaaagaaagatgactgaagaaccttttgttgttcctgc |
16992982 |
T |
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| Q |
117 |
agatgccgaggtaatttccatcgatgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtctgagggtggtggtgaa |
216 |
Q |
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| T |
16992981 |
agatgccgaggtaatttccatcgatgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtctgagggtggtggtgaa |
16992882 |
T |
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| Q |
217 |
agtggaggaagtggtgattttgatgctaaagatggaaagtttgttgatgaaaagtgtggggcacaagataacctgatttcgataaattcagatgagtatg |
316 |
Q |
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| T |
16992881 |
agtggaggaa---gtgattttgatgctaaagatggaaagtttgttgatgaaaagtgtggggcacaagataacctgatttcgataaattcagatgagtatg |
16992785 |
T |
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| Q |
317 |
gtgaaagtgaagaacactctgttgattctgatgctgataatgaagaagaag |
367 |
Q |
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| T |
16992784 |
gtgaaagtgaagaacactctgttgattctgatcctgataacgaagaagaag |
16992734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 367
Target Start/End: Complemental strand, 17008625 - 17008487
Alignment:
| Q |
235 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg---ggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---ag |
328 |
Q |
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| T |
17008625 |
tttgatgctaaagagggaaactttgttgagaaaaaatgtggtttggatgaagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaag |
17008526 |
T |
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| Q |
329 |
aacactctgttgattctgatgctgataatgaagaagaag |
367 |
Q |
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| T |
17008525 |
aacactctgttggttttggtggtgataatgaagaagaag |
17008487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 10601253 - 10601293
Alignment:
| Q |
235 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg |
275 |
Q |
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| T |
10601253 |
tttgatgcgaaagatggaaagtttgttgacgaaaagtgtgg |
10601293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 10600813 - 10600871
Alignment:
| Q |
17 |
catcaaagcggagaaagagtgatgaagaagataagggtttggaatatgtttctggttct |
75 |
Q |
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| T |
10600813 |
catcaaagcggagaaagagtgatgaagatgatatgagttttgactctctttctggttct |
10600871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 16969275 - 16969214
Alignment:
| Q |
93 |
tgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcgatgatgatgaatatg |
154 |
Q |
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| T |
16969275 |
tgaagaaccttttgtggttcctgaaggtgccaaggtaatttccattgaacatgatgattatg |
16969214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 35262234 - 35262418
Alignment:
| Q |
17 |
catcaaagcggagaaagagtgatgaagaagataagggtttggaatatgtttctggttctnnnnnnngaaagatgactgaagaaccttttgttgttcctgc |
116 |
Q |
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| T |
35262234 |
catcaaaacggagaaagagtgatgaagaagataaggggttggactatgtttctcgttctaaaaaaaggaagatgaacgaagaaccttttgttgttcctgc |
35262333 |
T |
|
| Q |
117 |
agatgccgaggtaatttccatcgatgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtct |
201 |
Q |
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| T |
35262334 |
agatgctgaggtagtttccatcgatgatgatgaatatgaagatgttggtcaagaaggttcagagcatagtgatgacaagatgtct |
35262418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 242 - 367
Target Start/End: Original strand, 35262417 - 35262548
Alignment:
| Q |
242 |
ctaaagatggaaagtttgttgatgaaaagtgtg---gggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---agaacactc |
335 |
Q |
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|||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
35262417 |
ctaaagatggaaagtttgttgatgaaaattgtgagagggaacaagataacccggtttcgataagttcagatgagtatggtgaaagtgatgaagaacactt |
35262516 |
T |
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| Q |
336 |
tgttgattctgatgctgataatgaagaagaag |
367 |
Q |
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| T |
35262517 |
tgttgattctgatgctgataatgaagaagaag |
35262548 |
T |
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