View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8105_high_2 (Length: 250)

Name: NF8105_high_2
Description: NF8105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8105_high_2
NF8105_high_2
[»] chr8 (16 HSPs)
chr8 (89-244)||(5296754-5296910)
chr8 (2-98)||(38036652-38036748)
chr8 (2-92)||(32909226-32909316)
chr8 (2-92)||(40645853-40645943)
chr8 (3-84)||(67267-67348)
chr8 (2-86)||(14512011-14512095)
chr8 (2-92)||(27302033-27302123)
chr8 (2-85)||(1645213-1645296)
chr8 (2-56)||(17523974-17524028)
chr8 (2-46)||(3466457-3466501)
chr8 (2-94)||(8496684-8496776)
chr8 (96-131)||(27709372-27709407)
chr8 (1-92)||(30464602-30464693)
chr8 (2-92)||(36631994-36632084)
chr8 (1-95)||(38842333-38842427)
chr8 (5-42)||(18419172-18419209)
[»] scaffold0195 (1 HSPs)
scaffold0195 (2-92)||(48-138)
[»] chr1 (14 HSPs)
chr1 (2-92)||(5117241-5117331)
chr1 (3-92)||(48613888-48613977)
chr1 (2-93)||(48312199-48312290)
chr1 (2-92)||(44963479-44963569)
chr1 (7-93)||(12685735-12685821)
chr1 (2-92)||(26476816-26476906)
chr1 (2-81)||(43452983-43453062)
chr1 (2-92)||(40058774-40058864)
chr1 (2-81)||(23337977-23338056)
chr1 (2-56)||(52688702-52688756)
chr1 (2-95)||(47912452-47912545)
chr1 (2-85)||(25815699-25815782)
chr1 (5-102)||(31931976-31932073)
chr1 (1-93)||(10100319-10100411)
[»] chr4 (14 HSPs)
chr4 (2-92)||(1615710-1615800)
chr4 (2-92)||(17492838-17492928)
chr4 (2-92)||(2805973-2806063)
chr4 (2-92)||(24505682-24505772)
chr4 (2-92)||(48079850-48079940)
chr4 (3-92)||(4271816-4271905)
chr4 (2-93)||(37588331-37588422)
chr4 (2-85)||(39260523-39260606)
chr4 (2-92)||(47833946-47834036)
chr4 (2-85)||(11260873-11260956)
chr4 (2-93)||(51716702-51716793)
chr4 (2-92)||(50685091-50685181)
chr4 (2-54)||(1613058-1613110)
chr4 (5-85)||(1981190-1981270)
[»] chr7 (12 HSPs)
chr7 (2-92)||(29247798-29247888)
chr7 (2-85)||(33376945-33377028)
chr7 (2-85)||(41007767-41007850)
chr7 (2-81)||(3123960-3124039)
chr7 (2-92)||(5842289-5842379)
chr7 (2-92)||(41844941-41845031)
chr7 (2-92)||(47713235-47713325)
chr7 (17-85)||(37099686-37099754)
chr7 (2-85)||(38850873-38850956)
chr7 (2-52)||(36404769-36404819)
chr7 (2-54)||(4620235-4620287)
chr7 (2-54)||(9173177-9173229)
[»] chr5 (19 HSPs)
chr5 (2-92)||(26801904-26801994)
chr5 (2-92)||(26809454-26809544)
chr5 (2-92)||(26824481-26824571)
chr5 (2-92)||(1831235-1831325)
chr5 (2-92)||(27674388-27674478)
chr5 (2-92)||(40316702-40316792)
chr5 (2-92)||(41410749-41410839)
chr5 (2-94)||(2805969-2806061)
chr5 (2-92)||(40796875-40796965)
chr5 (2-94)||(2799803-2799895)
chr5 (2-70)||(14639540-14639608)
chr5 (2-76)||(30788376-30788450)
chr5 (2-67)||(1918658-1918723)
chr5 (2-89)||(32110448-32110535)
chr5 (2-56)||(40365727-40365781)
chr5 (2-43)||(6734953-6734994)
chr5 (2-69)||(8627306-8627374)
chr5 (1-53)||(33402433-33402485)
chr5 (2-46)||(39035731-39035775)
[»] chr3 (12 HSPs)
chr3 (2-92)||(9997678-9997768)
chr3 (2-92)||(10228527-10228617)
chr3 (2-92)||(10106182-10106272)
chr3 (2-85)||(44821339-44821422)
chr3 (2-92)||(10232283-10232373)
chr3 (2-79)||(36594229-36594306)
chr3 (2-74)||(53019999-53020071)
chr3 (2-76)||(1334112-1334186)
chr3 (5-95)||(32961420-32961510)
chr3 (2-92)||(47070193-47070283)
chr3 (3-56)||(49220644-49220697)
chr3 (5-53)||(36364600-36364648)
[»] chr2 (10 HSPs)
chr2 (2-85)||(7601206-7601289)
chr2 (2-85)||(2831879-2831962)
chr2 (2-56)||(26436525-26436579)
chr2 (2-92)||(25627194-25627284)
chr2 (4-93)||(9273790-9273881)
chr2 (5-92)||(16646420-16646507)
chr2 (3-77)||(18504644-18504718)
chr2 (1-42)||(12209159-12209200)
chr2 (5-93)||(41575736-41575824)
chr2 (1-93)||(42754156-42754248)
[»] scaffold0289 (1 HSPs)
scaffold0289 (2-92)||(9294-9384)
[»] scaffold0172 (1 HSPs)
scaffold0172 (2-85)||(19545-19628)
[»] chr6 (8 HSPs)
chr6 (2-76)||(10109234-10109308)
chr6 (5-82)||(24949846-24949923)
chr6 (2-82)||(31948460-31948539)
chr6 (2-93)||(16661407-16661498)
chr6 (4-82)||(4889943-4890021)
chr6 (2-92)||(31709063-31709153)
chr6 (2-55)||(12677151-12677204)
chr6 (1-53)||(24825335-24825387)
[»] scaffold0014 (1 HSPs)
scaffold0014 (96-132)||(165138-165174)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 89 - 244
Target Start/End: Complemental strand, 5296910 - 5296754
Alignment:
Q  89 agtaacaaataaaaaagtgggtgacttgacaacttattattggactgtgt-agaggatgcaaccctaacatttctctaaaatctctttataaagagagaa 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5296910 agtaacaaataaaaaagtgggtgacttgacaacttattattggactatgttagagggtgcaaccctaacatttctctaaaatctctttataaagagagaa 5296811  T
Q  188 ctatttgtagctaccttagatagtaaaccaatataaatacaatgtgttcatctcatt 244  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  5296810 ctatttgtagctaccttaaatagtgaaccaatataaatacaatgtgttcatttcatt 5296754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 38036748 - 38036652
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaacaaat 98  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||| | |||||| | ||||||||||||||||| ||||||| ||||    
T  38036748 aatatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagtaaaaaat 38036652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 32909226 - 32909316
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||  | || ||| | ||||||||||||||| | ||||||    
T  32909226 aatatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaaatcaattgtgtcaagtattaagggacgaagggagta 32909316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 40645853 - 40645943
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||  |||||| |||||||||| |||||||| | || ||| |||||||||| |||||| | ||||||    
T  40645853 aatatattattcaagatatttaagctcgaagttatgcattgacatgcgtaataaggtcaattgtgttaagtattatgggacgaagggagta 40645943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 67267 - 67348
Alignment:
Q  3 atatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgg 84  Q
    |||||||||||||||||||||| |||| |||||| |||||||||| |||||||| | |||| | | |||||||| |||||||    
T  67267 atatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaggtcaactatgtcaagtattatgggacgg 67348  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 14512011 - 14512095
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaa 86  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||  ||||||| | || ||| | ||||||||| ||||||||    
T  14512011 aatatattattcaagatatttaagctcaaagttatgcattgacatgcataataagatcaattgtgtcaagtattaaaggacggaa 14512095  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 27302033 - 27302123
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||| |||||| | | || ||||| | |||||| |||||||| ||||||    
T  27302033 aatatattattcaagatatttaaactcaaaattatgcattgacatgcgtaatagggtcaattgtatcatgtattatgggacggagggagta 27302123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 1645296 - 1645213
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    |||| |||||||||||||||||| |||| | |||| |||||||||| |||||||| | |  ||||| |||||||| ||||||||    
T  1645296 aatacattattcaagatatttaagctcaaacttatgcattgacatgcgtaataaggtcatatgtatcaagtattatgggacgga 1645213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 17523974 - 17524028
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataag 56  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||| ||||||||    
T  17523974 aatatattattcaagatatttaagctcaaaattatgcattgacatgcgtaataag 17524028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 3466457 - 3466501
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacat 46  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||    
T  3466457 aatatattattcaagatatttaagctcaaagttatgcattgacat 3466501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 8496776 - 8496684
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaac 94  Q
    ||||||||||||||||||||||| |||| | |||| |||||| ||  |||||| | | |||||||| | |||||| |||||||| | ||||||    
T  8496776 aatatattattcaagatatttaagctcaaaattatgcattgatatacgtaatagggtcaactgtatcatgtattatgggacggaggaagtaac 8496684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 27709407 - 27709372
Alignment:
Q  96 aataaaaaagtgggtgacttgacaacttattattgg 131  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27709407 aataaaaaagtgggtgacttggcaacttattattgg 27709372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 30464602 - 30464693
Alignment:
Q  1 caatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||| |||| | ||| ||||||| ||| |||||  | | |||||| | |  |||||||||||||| ||||||    
T  30464602 caatatattattcaagatatttaaactcaaaattacacattgatatgcgtaatttggtcaactgtgtcacttattaagggacggagggagta 30464693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 36632084 - 36631994
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||  |||| | ||||  |||||||||||||| ||  |||| ||| | |||||||| ||| |||| ||||||    
T  36632084 aatatattattcaagatatttacactcaaaattatgtattgacatgtgtaaaaatgttaattgtgtaaagtattatggggcggatggagta 36631994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38842333 - 38842427
Alignment:
Q  1 caatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaaca 95  Q
    |||||||||||||||||||||||| |||| | |||  |||||  ||| |||||  | | |||||||| |  |||||||||||||| |||||||||    
T  38842333 caatatattattcaagatatttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtatcacttattaagggacggagggagtaaca 38842427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 18419172 - 18419209
Alignment:
Q  5 atattattcaagatatttaatctcagagttatacattg 42  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  18419172 atattattcaagatatttaatctcaaaattatacattg 18419209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 138 - 48
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| |||||||| | |||||| | ||||||||||||||||| ||||||    
T  138 aatatattattcaagatatttaatctcaaagttatacattggcatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 5117331 - 5117241
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||||| |||||| | ||||||||||||||||| ||||||    
T  5117331 aatatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataagttcaactgtgtcaagtattaagggacggagggagta 5117241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 48613977 - 48613888
Alignment:
Q  3 atatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||| ||||||||||||||||| |||| | ||||||||||||||| |||||||| |||||||||| |||||||| |||||| ||| ||||    
T  48613977 atattttattcaagatatttaagctcaaaattatacattgacatgcgtaataaggttaactgtatcaagtattatgggacgaaagaagta 48613888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 48312199 - 48312290
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaa 93  Q
    |||||||||||||| |||||||| |||| | |||| ||||||||||  ||||||| | |||||| |||||||||| ||||||||||||||||    
T  48312199 aatatattattcaaaatatttaagctcaaaattatgcattgacatgcataataaggtaaactgtgttaagtattatgggacggaaggagtaa 48312290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 44963569 - 44963479
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| ||||||  ||||||||| |||||||| | |||| | | ||||||||||||||||| ||||||    
T  44963569 aatatattattcaagatatttaagctcaaagttatgtattgacatgcgtaataaggtcaactatgtcaagtattaagggacggagggagta 44963479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 12685821 - 12685735
Alignment:
Q  7 attattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaa 93  Q
    |||||||||||||||||| |||| | |||| ||||||||||||||||||| | |||||| | ||||||||  ||||||| |||||||    
T  12685821 attattcaagatatttaagctcaaaattatgcattgacatgtgtaataaggtcaactgtgtcaagtattataggacggagggagtaa 12685735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 26476906 - 26476816
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| | ||||  ||||||||| |||||||| | |||||| | ||||||||||| ||||| ||||||    
T  26476906 aatatattattcaagatatttaaactcaaaattatgtattgacatgcgtaataaggtcaactgtgtcaagtattaaggaacggagggagta 26476816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 43453062 - 43452983
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaaggga 81  Q
    ||||||||||||||||||||||| |||| | |||| |||||| ||| |||||||| | |||||| | |||||||||||||    
T  43453062 aatatattattcaagatatttaaactcaaaattatgcattgatatgcgtaataaggtcaactgtgtcaagtattaaggga 43452983  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 40058864 - 40058774
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||  ||||||| |||| |||||| |||||||||| |||||||| | |||||| | |||||||| | |||||| ||||||    
T  40058864 aatatattattcaaagtatttaaactcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattatgagacggagggagta 40058774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 23337977 - 23338056
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaaggga 81  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||| |||||| | | |||||||| | |||||| ||||    
T  23337977 aatatattattcaagatatttaaactcaaaattatgcattgacatgcgtaatatggtcaactgtatcatgtattatggga 23338056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 52688702 - 52688756
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataag 56  Q
    |||||||||||||| |||||||| |||| |||||| ||||||||||| |||||||    
T  52688702 aatatattattcaatatatttaagctcaaagttatgcattgacatgtataataag 52688756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 47912452 - 47912545
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaaca 95  Q
    |||||||||||||| |||||||| |||| | |||| |||||||||  |||||||| | || |||   |||||||| |||||||| |||||||||    
T  47912452 aatatattattcaaaatatttaagctcaaaattatgcattgacatacgtaataaggtcaattgtggcaagtattatgggacggagggagtaaca 47912545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 25815699 - 25815782
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    |||||| |||||||||||||||| |||| | |||| |||||| ||  |||||||| | |||||| | || ||||||||||||||    
T  25815699 aatatactattcaagatatttaacctcaaaattatgcattgagatacgtaataagatcaactgtgtcaactattaagggacgga 25815782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 31932073 - 31931976
Alignment:
Q  5 atattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaacaaataaaa 102  Q
    |||||||||||||||||||| |||| | ||||  |||| |||| ||||||   | |||||| | | ||||||||| ||||| |||||| |||||||||    
T  31932073 atattattcaagatatttaagctcaaaattatgtattggcatgcgtaatagaatcaactgtgtcatgtattaaggaacggagggagtatcaaataaaa 31931976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 10100411 - 10100319
Alignment:
Q  1 caatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaa 93  Q
    ||||||||||||||| |||||||| |||| | |||  |||||| ||| ||||| || | |||||| | |  |||||||||||||| |||||||    
T  10100411 caatatattattcaaaatatttaaactcaaaattacgcattgatatgcgtaattaggtcaactgtgtcacttattaagggacggagggagtaa 10100319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 1615710 - 1615800
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||| |||| ||| | || |||||||||||||||||||||    
T  1615710 aatatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaggttaattgtgtcaaatattaagggacggaaggagta 1615800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 17492838 - 17492928
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| |||||| |||||| |||||||||||| |||||||| | |||||||||| |||||| ||||||    
T  17492838 aatatattattcaagatatttaagctcaaagttatgcattgatatgtgtaataaggttaactgtgtcaagtattaagagacggagggagta 17492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 2806063 - 2805973
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||| |||||||| | |||||| | ||||||||||||||||| ||||||    
T  2806063 aatatattattcaagatatttaagttcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 2805973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 24505682 - 24505772
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| ||||||  ||||||||| |||||||| | |||| | | ||||||||||||||||| ||||||    
T  24505682 aatatattattcaagatatttaagctcaaagttatgtattgacatgcgtaataaggtcaactatgtcaagtattaagggacggagggagta 24505772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 48079940 - 48079850
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||| | || ||| | |||| |||||||||||| ||||||    
T  48079940 aatatattattgaagatatttaagctcaaagttatacattgacatgcgtaataagatcaaatgtgtcaagttttaagggacggagggagta 48079850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 4271905 - 4271816
Alignment:
Q  3 atatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||| ||||||||||||||| |||| |||||| ||||| |||| |||||||| | |||||| | |||||||| |||||||| ||||||    
T  4271905 atatataattcaagatatttaagctcaaagttatgcattggcatgcgtaataaggtcaactgtgtcaagtattatgggacggagggagta 4271816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 37588422 - 37588331
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaa 93  Q
    ||||||||||| ||||||||||| |||| | |||| ||||| |||| | |||||| | |||||| | |||||||| ||||||||||||||||    
T  37588422 aatatattattaaagatatttaagctcaaaattatgcattggcatgcgcaataagatcaactgtgtcaagtattatgggacggaaggagtaa 37588331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 39260523 - 39260606
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    |||||||||||||||||||||||  ||| | |||| |||||||||| |||||||| | || ||| | |||||||||||||||||    
T  39260523 aatatattattcaagatatttaaattcaaaattatgcattgacatgcgtaataagatcaattgtgtcaagtattaagggacgga 39260606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 47834036 - 47833946
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||| |||||||  | |||||| | |||||||||| ||| || ||||||    
T  47834036 aatatattattcaagatatttaagctcaaaattatgcattgacatgcgtaataaagtcaactgtgtcaagtattaagagacagagggagta 47833946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 11260873 - 11260956
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||||||||||||| | || | |||| |||||||||| |||||||| | || ||| | || ||||||||||||||    
T  11260873 aatatattattcaagatatttaagcacaaaattatgcattgacatgcgtaataagatcaattgtgtcaaatattaagggacgga 11260956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 51716702 - 51716793
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaa 93  Q
    |||||||||||||| |||||||| |||| | |||| ||||||||||  ||||||| | |||| | | || |||||||||||||| |||||||    
T  51716702 aatatattattcaaaatatttaagctcaaaattatgcattgacatgcataataagctcaactatgtcaaatattaagggacggagggagtaa 51716793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 50685091 - 50685181
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||| ||||||||  ||| | ||||||||||  ||| |||||| | | |||||| | |||||||| |||||||| ||||||    
T  50685091 aatatattattcaaaatatttaagttcaaaattatacattggtatgcgtaatagggtcaactgtgtcaagtattatgggacggatggagta 50685181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 1613110 - 1613058
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaata 54  Q
    ||||||||||||||||||||||| |||| | ||||  ||||||||| ||||||    
T  1613110 aatatattattcaagatatttaaactcaaaattatgtattgacatgcgtaata 1613058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 1981270 - 1981190
Alignment:
Q  5 atattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    |||||||||||||||||||| |||| | |||| |||||||||| |||| | | | |||| ||| | |||||| ||||||||    
T  1981270 atattattcaagatatttaaactcaaaattatgcattgacatgcgtaagagggtcaactttatcatgtattatgggacgga 1981190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 29247798 - 29247888
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||| |||||||||||| |||||||| | |||||| | ||||||||||||||||| ||||||    
T  29247798 aatatattattcaagatatttaagttcaaagttgtacattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 29247888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 33376945 - 33377028
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| | ||| ||  | ||||||||||||||||| ||||||||    
T  33376945 aatatattattcaagatatttaagctcaaagttatacattgacatatataacaaagtcaactgtattaagtattatgggacgga 33377028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 41007850 - 41007767
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||  |||||||| | |||||| | |||||||| ||||||||    
T  41007850 aatatattattcaagatatttaaactcaaaattatacattgacatacgtaataaggtcaactgtgtcaagtattatgggacgga 41007767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 3124039 - 3123960
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaaggga 81  Q
    ||||||||||||||||||||||| |||| || ||| |||||||||| |||||||| | |||||| | |||||||| ||||    
T  3124039 aatatattattcaagatatttaagctcaaagatatgcattgacatgcgtaataaggtcaactgtgtcaagtattatggga 3123960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 5842289 - 5842379
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||  |||||| | | |||||| | | |||||| |||||||||||||||    
T  5842289 aatatattattcaagatatttaagctcaaaattatgcattgacattcgtaatatggtcaactgtgtcatgtattatgggacggaaggagta 5842379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 41844941 - 41845031
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||| ||||||||||| |||| |||||| |||| | ||| |||||||| | || ||| ||||||||||||||| ||| ||||||    
T  41844941 aatatattattgaagatatttaagctcaaagttatgcattaaaatgcgtaataaggtcaaatgtgttaagtattaagggatggagggagta 41845031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 47713325 - 47713235
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||||| |||||||| | || ||| | || ||||| |||||||| ||||||    
T  47713325 aatatattattcacgatatttaagctcaaagttatgcattgacatgcgtaataaggtcaattgtgtcaaatattatgggacggagggagta 47713235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 37099754 - 37099686
Alignment:
Q  17 atatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||| | |||| |||||||||| |||||||| | |||||| | |||||||| ||||||||    
T  37099754 atatttaatctcaaaattatgcattgacatgcgtaataagatcaactgtgtcaagtattatgggacgga 37099686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 38850873 - 38850956
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||||||||||||| |||| | ||||| ||| |||||  ||||||  |||||||||| || |||||  |||||||    
T  38850873 aatatattattcaagatatttaagctcaaaattatatattaacatgcataataaaattaactgtatcaaatattataggacgga 38850956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 36404819 - 36404769
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaa 52  Q
    |||||||||||||| |||||||| |||| |||||| |||||||||| ||||    
T  36404819 aatatattattcaatatatttaagctcaaagttatgcattgacatgcgtaa 36404769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 4620235 - 4620287
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaata 54  Q
    ||||||||||||||||||||||| |||| | |||| |||| |||||| |||||    
T  4620235 aatatattattcaagatatttaaactcaaaattatgcattaacatgtataata 4620287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 9173229 - 9173177
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaata 54  Q
    |||||||||||||||||||||||  ||| | |||| |||||||||| ||||||    
T  9173229 aatatattattcaagatatttaagttcaaaattatgcattgacatgcgtaata 9173177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 26801994 - 26801904
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||| |||||||| | |||||| | ||||||||||||||||| ||||||    
T  26801994 aatatattattcaagatatttaagttcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 26801904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 26809544 - 26809454
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||| |||||||| | |||||| | ||||||||||||||||| ||||||    
T  26809544 aatatattattcaagatatttaagttcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 26809454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 26824571 - 26824481
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||| |||||||| | |||||| | ||||||||||||||||| ||||||    
T  26824571 aatatattattcaagatatttaagttcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 26824481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 1831235 - 1831325
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||  | |||||  | ||||||||||||||||| ||||||    
T  1831235 aatatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaagtcaactgggtcaagtattaagggacggagggagta 1831325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 27674388 - 27674478
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||| |||||||||||||||||| |||| |||||| |||||||||| |||||||| | |||||| | |||||||||||||| || ||||||    
T  27674388 aatacattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggaccgagggagta 27674478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 40316702 - 40316792
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||  | |||||  | ||||||||||||||||| ||||||    
T  40316702 aatatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaagtcaactgggtcaagtattaagggacggagggagta 40316792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 41410839 - 41410749
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||  | |||||  | ||||||||||||||||| ||||||    
T  41410839 aatatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaagtcaactgggtcaagtattaagggacggagggagta 41410749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 2805969 - 2806061
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaac 94  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||  | |||||| | ||||||||  ||||||| ||||||||    
T  2805969 aatattttattcaagatatttaaactcaaagttatacattgacatgcgtaataaagtcaactgtgtcaagtattataggacggagggagtaac 2806061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 40796965 - 40796875
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||| |||||||  ||| |||||| |||||||||| |||||||| | |||||| | |||||||||||||| || ||||||    
T  40796965 aatatattattcaaggtatttaagttcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacagagggagta 40796875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 2799803 - 2799895
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaac 94  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||  | |||||| | ||||||||  ||| ||| ||||||||    
T  2799803 aatattttattcaagatatttaaactcaaagttatacattgacatgcgtaataaagtcaactgtgtcaagtattataggatggagggagtaac 2799895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 14639608 - 14639540
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaa 70  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||  |||||||| | |||||||||||    
T  14639608 aatatattattcaagatatttaagctcaaagttatgcattgacatacgtaataagatcaactgtattaa 14639540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 30788376 - 30788450
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtatta 76  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||| || ||||| | |||||| | ||||||||    
T  30788376 aatatattattcaagatatttaagctcaaaattatgcattgacatgcgttataaggtcaactgtttcaagtatta 30788450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 1918723 - 1918658
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtat 67  Q
    |||||||||||||||||||||||  ||| | |||| ||||| ||||||||||||| | ||||||||    
T  1918723 aatatattattcaagatatttaaggtcaaaattatgcattggcatgtgtaataaggtcaactgtat 1918658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 32110535 - 32110448
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaagga 89  Q
    |||||||||||||||||||| || |||| |||||| |||||| ||| |||||||  | |||| | | ||||||||  |||||||||||    
T  32110535 aatatattattcaagatattgaagctcaaagttatgcattgagatgcgtaataatgtcaactctgtcaagtattattggacggaagga 32110448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 40365781 - 40365727
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataag 56  Q
    |||||||||||||| ||||||||  ||| |||||| |||||||||| ||||||||    
T  40365781 aatatattattcaaaatatttaagttcaaagttatgcattgacatgcgtaataag 40365727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 6734953 - 6734994
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattga 43  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  6734953 aatatattattcaagatatttaagctcaaaattatacattga 6734994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 8627306 - 8627374
Alignment:
Q  2 aatatattattcaagatatttaatctc-agagttatacattgacatgtgtaataagtttaactgtatta 69  Q
    ||||||||||||||||||||||| ||| | | |||| |||||| |||||||||||| | |||| |||||    
T  8627306 aatatattattcaagatatttaaactcaaaaattatgcattgatatgtgtaataagatcaactatatta 8627374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33402485 - 33402433
Alignment:
Q  1 caatatattattcaagatatttaatctcagagttatacattgacatgtgtaat 53  Q
    |||||||||||||||||||||||| |||| | ||| ||||||| ||| |||||    
T  33402485 caatatattattcaagatatttaaactcaaaattacacattgatatgcgtaat 33402433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 39035731 - 39035775
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacat 46  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||    
T  39035731 aatatattattcaagatatttaagctcaaaattattcattgacat 39035775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 9997768 - 9997678
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||| |||||||| | |||||| | ||||||||||||||||| ||||||    
T  9997768 aatatattattcaagatatttaagttcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 9997678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 10228617 - 10228527
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||| |||||||| | |||||| | ||||||||||||||||| ||||||    
T  10228617 aatatattattcaagatatttaagttcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 10228527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 10106272 - 10106182
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||| |||||||  | |||||| | ||||||||||||||||| ||||||    
T  10106272 aatatattattcaagatatttaagttcaaagttatgcattgacatgcgtaataaagtcaactgtgtcaagtattaagggacggagggagta 10106182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 44821422 - 44821339
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||| | || ||| | ||||||||| |||||||    
T  44821422 aatatattattcaagatatttaagctcaaagttatgcattgacatatgtaataaggtcaattgtgtcaagtattaaaggacgga 44821339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 10232373 - 10232283
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||| |||||||  | |||||| | ||||||||| ||||||| ||||||    
T  10232373 aatatattattcaagatatttaagttcaaagttatgcattgacatgcgtaataaagtcaactgtgtcaagtattaaaggacggagggagta 10232283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 36594306 - 36594229
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagg 79  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||| |||||||| | |||||| | |||||||||||    
T  36594306 aatatattattcaagatatttaagctcaaaattatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagg 36594229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 53019999 - 53020071
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtat 74  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||| |||||||| | |||||| | ||||||    
T  53019999 aatatattattcaagatatttagtctcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtat 53020071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 1334186 - 1334112
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtatta 76  Q
    ||||||||||| ||||||||||| |||| | |||| ||||||||||||||||||| | |||||||| || |||||    
T  1334186 aatatattatttaagatatttaagctcaaaattatgcattgacatgtgtaataaggtcaactgtatcaaatatta 1334112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 32961420 - 32961510
Alignment:
Q  5 atattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaaca 95  Q
    ||||||||||| |||||||| |||| | |||| |||||||||| |||||| | | ||||||||    ||||| |||||||| |||||||||    
T  32961420 atattattcaaaatatttaaactcaaaattatgcattgacatgcgtaatagggtcaactgtatcgtatattatgggacggacggagtaaca 32961510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 47070193 - 47070283
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||| || |||||||| || | |||||||||||| |||| |||||||| | || ||| | || ||||| |||| ||||||||||    
T  47070193 aatatattatttaatatatttaagctgaaagttatacattggcatgcgtaataagatcaagtgtgtcaaatattatgggatggaaggagta 47070283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 49220644 - 49220697
Alignment:
Q  3 atatattattcaagatatttaatctcagagttatacattgacatgtgtaataag 56  Q
    |||||||||||||||||||||| |||| | |||||||||  |||| ||||||||    
T  49220644 atatattattcaagatatttaacctcaaaattatacatttgcatgcgtaataag 49220697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 36364648 - 36364600
Alignment:
Q  5 atattattcaagatatttaatctcagagttatacattgacatgtgtaat 53  Q
    |||||||||||||||||||| |||| | ||||||||||| ||| |||||    
T  36364648 atattattcaagatatttaagctcaaaattatacattgaaatgcgtaat 36364600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 7601289 - 7601206
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| |||||||  | |||||| | |||||||||||||||||    
T  7601289 aatatattattcaagatatttaagctcaaagttatgcattgacatgcgtaataaagtcaactgtgtcaagtattaagggacgga 7601206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 2831879 - 2831962
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||||||||||||| |||| | |||| |||| ||||| |||||||| | |||||| | |||||||| ||||||||    
T  2831879 aatatattattcaagatatttaagctcaaaattatgcattaacatgcgtaataaggtcaactgtgtcaagtattatgggacgga 2831962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 26436579 - 26436525
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataag 56  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||    
T  26436579 aatatattattcaagatatttaaactcaaagttatgcattgacatgcgtaataag 26436525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 25627194 - 25627284
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||| |||||||| |||| | |||| ||||| ||||  ||||||| | |||| | | ||||||||||||||||| ||||||    
T  25627194 aatatattattcaatatatttaagctcaaaattatgcattgtcatgcataataaggtcaactatgtcaagtattaagggacggagggagta 25627284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 9273790 - 9273881
Alignment:
Q  4 tatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaact-gtat-taagtattaagggacggaaggagtaa 93  Q
    |||||||||||||||||||||  ||| |||||| |||||||||  |||||||| | ||||  |||  ||||||||||||||||| |||||||    
T  9273790 tatattattcaagatatttaagttcaaagttatgcattgacatacgtaataaggtcaactaatatacaagtattaagggacggagggagtaa 9273881  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 16646420 - 16646507
Alignment:
Q  5 atattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||||||||| || | | |||| |||||| ||| |||||    | |||||||| | ||||||||||||||||||||||    
T  16646420 atattattcaagatatttaagcttaaaattatgcattgaaatgcgtaatggagtcaactgtatcatgtattaagggacggaaggagta 16646507  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 18504644 - 18504718
Alignment:
Q  3 atatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaa 77  Q
    |||||||||||||||||||||| |||  | |||| |||||||||  |||||||| | |||| ||| |||||||||    
T  18504644 atatattattcaagatatttaagctcgaaattatgcattgacatacgtaataaggtcaactatatcaagtattaa 18504718  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12209159 - 12209200
Alignment:
Q  1 caatatattattcaagatatttaatctcagagttatacattg 42  Q
    |||||||||||||||||||||||| |||| | ||||||||||    
T  12209159 caatatattattcaagatatttaaactcaaaattatacattg 12209200  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 41575736 - 41575824
Alignment:
Q  5 atattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaa 93  Q
    |||||||||||||||||||| |||| | |||| |||||| ||| |||||    | |||||||| |  |||||||||||||| |||||||    
T  41575736 atattattcaagatatttaagctcaaaattatgcattgaaatgcgtaatgcagtcaactgtatcatatattaagggacggagggagtaa 41575824  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 42754248 - 42754156
Alignment:
Q  1 caatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaa 93  Q
    |||||||||||||||||||||||| |||| | ||| ||||||  ||| |||||  | | |||||| | |  |||||||||||||| |||||||    
T  42754248 caatatattattcaagatatttaaactcaaaattacacattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtaa 42754156  T

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Target: scaffold0289 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 9294 - 9384
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    ||||||||||||||||||||||| || | || |||||||||| ||| |||||||| | |||||||| |||||||| || ||||| ||||||    
T  9294 aatatattattcaagatatttaaactaaaagctatacattgatatgcgtaataaggtcaactgtatcaagtattatggaacggagggagta 9384  T

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Target: scaffold0172 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 19628 - 19545
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacgga 85  Q
    ||||||||||||||||||||||| |||| | |||| |||||||||  |||||||| | |||||| | ||||||||| |||||||    
T  19628 aatatattattcaagatatttaagctcaaaattatgcattgacattcgtaataaggtcaactgtgtcaagtattaatggacgga 19545  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 10109308 - 10109234
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtatta 76  Q
    ||||||||||||||||||||||| |||| |||||| ||||  |||| |||||||| | |||||| ||||||||||    
T  10109308 aatatattattcaagatatttaagctcaaagttatgcatttgcatgcgtaataaggtaaactgtgttaagtatta 10109234  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 24949846 - 24949923
Alignment:
Q  5 atattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggac 82  Q
    |||||||||||||||||||| || | |||||| |||||||||| |||||||| | || ||||| |||||||| |||||    
T  24949846 atattattcaagatatttaagctgaaagttatgcattgacatgcgtaataaggtcaattgtatcaagtattatgggac 24949923  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 31948539 - 31948460
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggac 82  Q
    |||||||||||||||||||| || |||||| |||| |||||||||| |||||||| | || ||| | ||||||||||||||    
T  31948539 aatatattattcaagatatt-aagctcagaattatgcattgacatgcgtaataaggtcaattgtgtcaagtattaagggac 31948460  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 16661498 - 16661407
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagtaa 93  Q
    ||||||||||||||||||||||| |||| ||||||  ||||||||  |||||||| | |||||| | ||||||||  |||| || |||||||    
T  16661498 aatatattattcaagatatttaagctcaaagttatgtattgacatacgtaataaggtcaactgtgtaaagtattataggacagagggagtaa 16661407  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 4890021 - 4889943
Alignment:
Q  4 tatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggac 82  Q
    ||||||||||||||||||||| |||| | |||| |||||||||| |||||||| | ||| || | |||||||| |||||    
T  4890021 tatattattcaagatatttaagctcaaaattatgcattgacatgcgtaataagatcaaccgtgtcaagtattatgggac 4889943  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 31709063 - 31709153
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataagtttaactgtattaagtattaagggacggaaggagta 92  Q
    |||||||||||||| |||||||| |||| |||||| ||||| ||||  ||||||| | |||| | | |||||||| |||||| | ||||||    
T  31709063 aatatattattcaaaatatttaagctcaaagttatgcattggcatgcataataagatcaactatgtcaagtattatgggacgaatggagta 31709153  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 12677151 - 12677204
Alignment:
Q  2 aatatattattcaagatatttaatctcagagttatacattgacatgtgtaataa 55  Q
    |||||||||||||| |||||||| |||| | |||| |||||| |||||||||||    
T  12677151 aatatattattcaaaatatttaaactcaaaattatgcattgatatgtgtaataa 12677204  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24825335 - 24825387
Alignment:
Q  1 caatatattattcaagatatttaatctcagagttatacattgacatgtgtaat 53  Q
    |||||||||||||||||||||||| |||| | ||| ||||||| ||| |||||    
T  24825335 caatatattattcaagatatttaaactcaaaattacacattgatatgcgtaat 24825387  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 165174 - 165138
Alignment:
Q  96 aataaaaaagtgggtgacttgacaacttattattgga 132  Q
    |||||||||||| |||||||| |||||||||||||||    
T  165174 aataaaaaagtgagtgacttggcaacttattattgga 165138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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