View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8105_high_4 (Length: 204)

Name: NF8105_high_4
Description: NF8105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8105_high_4
NF8105_high_4
[»] chr4 (16 HSPs)
chr4 (15-155)||(14208505-14208645)
chr4 (95-155)||(14209536-14209596)
chr4 (95-155)||(14210487-14210547)
chr4 (95-155)||(14211456-14211516)
chr4 (95-155)||(14212407-14212467)
chr4 (95-155)||(14213376-14213436)
chr4 (95-155)||(14214344-14214404)
chr4 (95-155)||(14215313-14215373)
chr4 (95-155)||(14216282-14216342)
chr4 (95-155)||(14217233-14217293)
chr4 (95-155)||(14218184-14218244)
chr4 (95-155)||(14219154-14219214)
chr4 (95-155)||(14220123-14220183)
chr4 (95-155)||(14221074-14221134)
chr4 (95-155)||(14222043-14222103)
chr4 (95-155)||(14223012-14223072)
[»] chr2 (1 HSPs)
chr2 (15-155)||(31408723-31408863)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 14208505 - 14208645
Alignment:
Q  15 gagaagaaagagcgcatcaataagagaattgaaataaaggagaaatagaagagttccttctgccagctgaagaagtttttaggattgagatacatgaggg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14208505 gagaagaaagagcgcatcaataagagaattgaaataaaggagaaatagaagagttccttctgccagctgaagaagtttttaggattgagatacatgaggg 14208604  T
Q  115 gagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14208605 gagaatattgaaatctgttttagtggcaaatgaccaaattg 14208645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14209536 - 14209596
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14209536 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14209596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14210487 - 14210547
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14210487 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14210547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14211456 - 14211516
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14211456 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14211516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14212407 - 14212467
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14212407 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14212467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14213376 - 14213436
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14213376 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14213436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14214344 - 14214404
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14214344 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14214404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14215313 - 14215373
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14215313 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14215373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14216282 - 14216342
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14216282 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14216342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14217233 - 14217293
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14217233 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14217293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14218184 - 14218244
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14218184 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14218244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14219154 - 14219214
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14219154 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14219214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14220123 - 14220183
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14220123 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14220183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14221074 - 14221134
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14221074 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14221134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14222043 - 14222103
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14222043 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14222103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14223012 - 14223072
Alignment:
Q  95 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223012 aggattgagatacatgaggggagaatattgaaatctgttttagtggcaaatgaccaaattg 14223072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 31408723 - 31408863
Alignment:
Q  15 gagaagaaagagcgcatcaataagagaattgaaataaaggagaaatagaagagttccttctgccagctgaagaagtttttaggattgagatacatgaggg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31408723 gagaagaaagagcgcatcaataagagaattgaaataaaggagaaatagaagagttccttctgccagctgaagaagtttttaggattgagatacatgaggg 31408822  T
Q  115 gagaatattgaaatctgttttagtggcaaatgaccaaattg 155  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31408823 gagaatattgaaatctgttttagtggcaaatgaccaaattg 31408863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University