View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8105_low_1 (Length: 703)
Name: NF8105_low_1
Description: NF8105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8105_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 688
Target Start/End: Original strand, 37421411 - 37422101
Alignment:
| Q |
18 |
ttttctatattcttttagagtgtttcgtggatgggtgaggtttccttgagagtctgtttttcgcacccttttccagctttttggttaggaatatgggaaa |
117 |
Q |
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| T |
37421411 |
ttttctatattcttttagagtgtttcgtggatgggtgaggtttccttgagagtctgtttttcgcacccttttccagttttttggttaggaatatgggaaa |
37421510 |
T |
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| Q |
118 |
ttgggtagaggatgagctggggtagaacttaagttggaatagaagtt-------------------aggagtttgatgacaacttggtctcggttttggt |
198 |
Q |
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| T |
37421511 |
ttgggtagaggatgagctggggtagaacttaagttggagtagaagtttgtttgtttgtttgggagtaggagtttgatgacaacttggtctcggttttggt |
37421610 |
T |
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| Q |
199 |
gggcattacgctttcacaacatgaggagtattttttatcgtggaagcatgacttatgtgaggtttaaacaatttactcagcctactcagctctttatgta |
298 |
Q |
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| T |
37421611 |
gggcattacgctttggcaacatgaggagtattttttatcgtggaagcatgacttaagtgaggtttaaacaatttatttagcctactcagctctttatgta |
37421710 |
T |
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| Q |
299 |
gagggaactcgtccataagagaaggtccaacttttagcaaaagtttggaaaagttaggcaccctcaaaggttttcacctggagttgcttcacgatacggt |
398 |
Q |
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| T |
37421711 |
gagggaactcgtccataagagaaggtccaacttttagcaaaagtttggaaaagttaggcaccctcaaaggttttcacctggagttgcttcacgatacggt |
37421810 |
T |
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| Q |
399 |
tctacccatcaaaatattttcaggcattgagttattgttgatcttagtgatgcgtcatgtgtgttttgagagaggtgacaatagagtcttctaaccgtat |
498 |
Q |
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| T |
37421811 |
tctacccatcaaaatattttcaggcattgagttattgttgatcttagtgatgcgtcatgtgtgttttgagagaggtgacaatagagtcttctaaccgtat |
37421910 |
T |
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| Q |
499 |
gtttgtcacttgtgatttctcttcgagggtgtggtatcaagttttaggtggtttgggtgagtgttggtgttgcctcgagatttattcc-aatctttttgc |
597 |
Q |
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| T |
37421911 |
gtttgtcacttgtgatttctcttcgagggtgtggtatcaagttttaggtggtttgggtgagtgttggtgttgcctcgagatttattccaaatctttttgc |
37422010 |
T |
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| Q |
598 |
cattattttatctctaggagttgggtctaaaatcagactaggtttgacttggtctagctttcggttttgtagagcaaccacaagtcttcta |
688 |
Q |
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| T |
37422011 |
cattattttatctctaggagttgggtctaaaatcagactaggtttgacttggtctagctttcggttttgtggagcaaccacaagtcttcta |
37422101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 498 - 581
Target Start/End: Complemental strand, 45901615 - 45901531
Alignment:
| Q |
498 |
tgtttgtcacttgtgatttctcttcgagggtgtggtat-caagttttaggtggtttgggtgagtgttggtgttgcctcgagattt |
581 |
Q |
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|||||||||| |||||||||||||| ||||| ||||| ||| |||||||||||| || || || || |||| ||||||||||| |
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| T |
45901615 |
tgtttgtcacctgtgatttctcttcttgggtgaggtatacaatttttaggtggttaggttggttggtgttgtttcctcgagattt |
45901531 |
T |
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