View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8105_low_4 (Length: 252)

Name: NF8105_low_4
Description: NF8105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8105_low_4
NF8105_low_4
[»] chr8 (3 HSPs)
chr8 (33-242)||(33404275-33404484)
chr8 (75-141)||(28377639-28377705)
chr8 (86-175)||(27121810-27121899)
[»] chr7 (3 HSPs)
chr7 (85-141)||(27484143-27484199)
chr7 (75-141)||(8839375-8839441)
chr7 (75-141)||(13254195-13254261)
[»] chr2 (5 HSPs)
chr2 (75-143)||(3772635-3772703)
chr2 (76-138)||(993736-993798)
chr2 (75-141)||(17981479-17981545)
chr2 (75-128)||(44752301-44752354)
chr2 (77-141)||(5394380-5394444)
[»] chr6 (3 HSPs)
chr6 (76-141)||(278374-278439)
chr6 (75-138)||(25084015-25084078)
chr6 (75-141)||(21910186-21910252)
[»] chr4 (2 HSPs)
chr4 (76-141)||(38766071-38766136)
chr4 (76-142)||(22189481-22189547)
[»] chr3 (2 HSPs)
chr3 (75-192)||(38331109-38331226)
chr3 (75-139)||(25224680-25224744)
[»] chr5 (1 HSPs)
chr5 (75-107)||(12309397-12309429)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 33404484 - 33404275
Alignment:
Q  33 ttctaattgataattgttaataattaaatataagttgagcagccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagt 132  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||    
T  33404484 ttctaattgataattgttaataattaaatataagttgagcacccaagagcgcttagatgagatgacacaagtctcttatagctcaaccaaagtcatgggt 33404385  T
Q  133 ttgaatccaattttaaggatgtatcagcattaaaactgttagggtgagttttccgcccataattaagtcctacaaagctcgaggggttagtatgtagagg 232  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  33404384 ttgaatccaattttaagcatgtagcagcattaaaacttttagggtgagttttccgcccataattaagtcctacaaagctcgaggggttaatctgtagagg 33404285  T
Q  233 atacccgatt 242  Q
    ||||||||||    
T  33404284 atacccgatt 33404275  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 28377639 - 28377705
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    ||||||||||||| |||||||||||| ||| |||| ||||| || ||||||| |||||| |||||||    
T  28377639 ccaagagcgcttacatgagataacacgagtttcttttagcttaatcaaagtcatgagttcgaatcca 28377705  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 27121899 - 27121810
Alignment:
Q  86 tagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatccaattttaaggatgtatcagcattaaaactgttagg 175  Q
    |||||||||||||||  ||||||| ||||| ||||||||| ||| ||| |||||||  |||||| ||| | |||  |||||||| |||||    
T  27121899 tagatgagataacacgggtctcttctagcttaaccaaagttctgggttcgaatccagctttaagcatgcaacagtgttaaaacttttagg 27121810  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 27484199 - 27484143
Alignment:
Q  85 ttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    ||||||||||| ||||||||||||| ||||| |||||| ||||||||||| ||||||    
T  27484199 ttagatgagatgacacaagtctcttctagcttaaccaaggtcctgagtttaaatcca 27484143  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 8839441 - 8839375
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    ||||||||||||||||||||| | ||  ||||||| ||||| |||||| |||||| ||| |||||||    
T  8839441 ccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatcca 8839375  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 13254261 - 13254195
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    |||||||||||||||||||||   ||  ||||||| ||||| |||||| |||||||||| |||||||    
T  13254261 ccaagagcgcttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatcca 13254195  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 3772703 - 3772635
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatccaat 143  Q
    ||||||||||||||||||||| ||||||||||||| ||  | |||||| ||||| |||| |||||||||    
T  3772703 ccaagagcgcttagatgagatgacacaagtctcttctaatttaaccaaggtcctaagttcgaatccaat 3772635  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 993736 - 993798
Alignment:
Q  76 caagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaat 138  Q
    |||||||||||||||||||| ||||  ||||||||||||| |||||| |||||| ||| ||||    
T  993736 caagagcgcttagatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaat 993798  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 17981479 - 17981545
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    |||| ||||||||||||||||   || |||||||| ||||| |||||||||||||| ||| ||||||    
T  17981479 ccaatagcgcttagatgagatggaacgagtctcttctagcttaaccaaagtcctgaatttaaatcca 17981545  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 44752354 - 44752301
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcct 128  Q
    ||||| ||||||||||||||| | ||||||||||| ||||| ||||||| ||||    
T  44752354 ccaagtgcgcttagatgagatgatacaagtctcttctagcttaaccaaactcct 44752301  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 5394380 - 5394444
Alignment:
Q  77 aagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    |||||||||||||||||||   || |||||||| ||||| |||||| |||||| ||| |||||||    
T  5394380 aagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatcca 5394444  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 278374 - 278439
Alignment:
Q  76 caagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    |||||||| ||||||||||| |||| |||||||| ||||| ||| || ||| ||||||||||||||    
T  278374 caagagcgtttagatgagatgacacgagtctcttctagcttaactaaggtcttgagtttgaatcca 278439  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 25084015 - 25084078
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaat 138  Q
    |||||| | |||||||||||| ||||||||||||| ||||| || ||||||| |||||| ||||    
T  25084015 ccaagaacacttagatgagatgacacaagtctcttctagcttaatcaaagtcttgagttcgaat 25084078  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 21910186 - 21910252
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    ||||||||| ||||||||||| | ||||||||||| ||||| ||||||  ||||| ||| |||||||    
T  21910186 ccaagagcgtttagatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatcca 21910252  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 38766071 - 38766136
Alignment:
Q  76 caagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatcca 141  Q
    ||||||||||||||||||||   || |||||||| ||||| |||||| |||||| |||||||||||    
T  38766071 caagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatcca 38766136  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 22189547 - 22189481
Alignment:
Q  76 caagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatccaa 142  Q
    ||||||| |||||||||||| |||  |||||||| ||||| |||||| |||| ||||| ||||||||    
T  22189547 caagagcacttagatgagatgacatgagtctcttctagcttaaccaaggtccagagttcgaatccaa 22189481  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 38331109 - 38331226
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatccaattttaaggatgtatcagcattaaaactgttag 174  Q
    |||||||||||||||||||||    |  ||||||| || || |||||| ||||||||||||||||||| ||| || ||| | |||| |||||||| ||||    
T  38331109 ccaagagcgcttagatgagatggatcgggtctcttctaacttaaccaatgtcctgagtttgaatccaactttgagcatgcagcagcgttaaaactcttag 38331208  T
Q  175 ggtgagttttccgcccat 192  Q
     | ||| || ||||||||    
T  38331209 agagagcttgccgcccat 38331226  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 25224680 - 25224744
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctcttatagctcaaccaaagtcctgagtttgaatc 139  Q
    ||||||||||||||||||||| | ||  ||||||| ||||| |||||| |||||| ||| |||||    
T  25224680 ccaagagcgcttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatc 25224744  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 12309397 - 12309429
Alignment:
Q  75 ccaagagcgcttagatgagataacacaagtctc 107  Q
    ||||||||||||| |||||||||||||||||||    
T  12309397 ccaagagcgcttaaatgagataacacaagtctc 12309429  T

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