View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_high_18 (Length: 253)
Name: NF8106_high_18
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 4483313 - 4483526
Alignment:
| Q |
24 |
agaccctgaggacaatcacactctcaggtcctaagtcaattctgacaggccagcccaagtgggttcgaaatttaaatttagcatgtactagtattatttt |
123 |
Q |
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| T |
4483313 |
agaccttgaggaggatcagactctcaggtcccaagtcaatattgacaggccaacccaagtgggttcgaaatttaaatttagcatgtaccagtattatttt |
4483412 |
T |
|
| Q |
124 |
tgcacctaattgattgaacaatcgatatgtgaattttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaat |
223 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483413 |
tgcacctaattgattgaacaattggtatgtgaattttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaat |
4483512 |
T |
|
| Q |
224 |
tccctgaacaccaa |
237 |
Q |
| |
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|||||||||||||| |
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| T |
4483513 |
tccctgaacaccaa |
4483526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 35230845 - 35230916
Alignment:
| Q |
160 |
tacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaa |
231 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
35230845 |
tacctgagattccagcagtacagtaaacaagagcaaagatcatgccaccaaaagcccaagcaattccttgaa |
35230916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 2650083 - 2650161
Alignment:
| Q |
159 |
ttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaa |
237 |
Q |
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|||||||| || |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||| ||||| |
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| T |
2650083 |
ttacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattccttgaataccaa |
2650161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 31460746 - 31460823
Alignment:
| Q |
160 |
tacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaa |
237 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||| |||||||||||| |||| ||||| |
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| T |
31460746 |
taccagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattccttgaataccaa |
31460823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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