View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8106_high_2 (Length: 405)

Name: NF8106_high_2
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8106_high_2
NF8106_high_2
[»] chr3 (2 HSPs)
chr3 (54-194)||(55383417-55383557)
chr3 (192-266)||(19341907-19341979)
[»] chr4 (2 HSPs)
chr4 (199-377)||(53730768-53730945)
chr4 (195-274)||(53731276-53731353)
[»] chr2 (2 HSPs)
chr2 (284-379)||(596765-596862)
chr2 (194-274)||(597190-597268)
[»] chr8 (2 HSPs)
chr8 (194-274)||(26936796-26936874)
chr8 (227-373)||(26937205-26937344)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 55383417 - 55383557
Alignment:
Q  54 gtgagcatttggatggaattggagaggctgacatccattttgctccacaagttaacattactgctcgctcactctgcttcccttacttcctctccaccca 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383417 gtgagcatttggatggaattggagaggctgacatccattttgctccacaagttaacattactgctcgctcactctgcttcccttacttcctctccaccca 55383516  T
Q  154 tttctttgcattctctttctattctataaataaataagtaa 194  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  55383517 tttctttgcattctctttctattctataaataaataagtaa 55383557  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 19341907 - 19341979
Alignment:
Q  192 taagagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacata 266  Q
    ||||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||    
T  19341907 taagagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacata 19341979  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 377
Target Start/End: Original strand, 53730768 - 53730945
Alignment:
Q  199 ttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaa 298  Q
    |||||||||||| |||||| |||||||  ||||||||||| |||  ||||||||  |||| | |||||||| ||||         |||||||||||||||    
T  53730768 ttaattgtggtgcactgaccgtgtaaa--agaactttacacagttagccaataaattttttcaacataatcctttttaaaaaaaatgttaatttattcaa 53730865  T
Q  299 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgctt 377  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||    
T  53730866 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactc-ccccattcttctctctgctt 53730945  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 53731353 - 53731276
Alignment:
Q  195 gagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 274  Q
    |||||||||||||||| |||||| |||||||  ||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  53731353 gagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcaaccaataacattttgccacataatcctttt 53731276  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 284 - 379
Target Start/End: Original strand, 596765 - 596862
Alignment:
Q  284 tgttaatttattcaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgcttct 379  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||| |||||| |||||||    
T  596765 tgttaatttatacaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactccccccattattctctatgcttct 596862  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 597268 - 597190
Alignment:
Q  194 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 274  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| | ||||||||||||||||||||||| ||||    
T  597268 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagtcaataacattttgccacataatcctttt 597190  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 26936796 - 26936874
Alignment:
Q  194 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 274  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  26936796 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacataatcctttt 26936874  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 373
Target Start/End: Complemental strand, 26937344 - 26937205
Alignment:
Q  227 aagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaataaaaggtaaattctgaaggtgtgcctc 326  Q
    ||||| |||||| |||| |||||||| |||||||||||||||| ||||         |||||||||||||||||||||||||        ||||||||||    
T  26937344 aagaaatttacacagtcagccaataaaattttgccacataatcctttttaaaaaaa-tgttaatttattcaataaaaggtaa--------ggtgtgcctc 26937254  T
Q  327 tccacgttcttgtc--agttgtgtcgttactctccccattcttctctct 373  Q
    ||||||||||||||   ||||||||||||||| ||||||| || |||||    
T  26937253 tccacgttcttgtctttgttgtgtcgttactccccccatttttttctct 26937205  T

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