View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_high_20 (Length: 250)
Name: NF8106_high_20
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 44016181 - 44015936
Alignment:
| Q |
1 |
atgtatcatctaacgatctcactggcgaaatacctggtgattttgggaagctagttgttcttgaacagcttcatttatcagataattcgctcaccggtca |
100 |
Q |
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| T |
44016181 |
atgtatcatctaacgatctcactggtgaaatacctggtgattttgggaagctagttgttcttgaacagcttcatttatcagataattcgctcaccggtca |
44016082 |
T |
|
| Q |
101 |
aataccgtggcagttgagtaactgcacaagccttgcaactgtccagcttgacaagaatcagttatcaggtacaattccttatcagcttggaaagttgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016081 |
aataccgtggcagttgagtaactgcacaagccttgcaactgtccagcttgacaagaatcagttatcaggtacaattccttatcagcttggaaagttgaag |
44015982 |
T |
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| Q |
201 |
gttctgcagagttttttcttgtgggggaatttggtctctgctacta |
246 |
Q |
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| T |
44015981 |
gttctacagagttttttcttgtgggggaatttggtttctggtacta |
44015936 |
T |
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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 6440348 - 6440416
Alignment:
| Q |
114 |
ttgagtaactgcacaagccttgcaactgtccagcttgacaagaatcagttatcaggtacaattccttat |
182 |
Q |
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| T |
6440348 |
ttgagtagcagcacaagcctggaaactgttcagcttgacaagaatcaattatcaggtacaattccttat |
6440416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 34765850 - 34765788
Alignment:
| Q |
163 |
tatcaggtacaattccttatcagcttggaaagttgaaggttctgcagagttttttcttgtggg |
225 |
Q |
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| T |
34765850 |
tatcaagtacaattccttatcaggtttgaaaattgaaggttctgcatggtattttcttgtggg |
34765788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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