View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_high_22 (Length: 243)
Name: NF8106_high_22
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_high_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4483766 - 4483524
Alignment:
| Q |
1 |
gagtaggagcaaacaagtatagagaaaaccaaccaataggaactgctgctcaatctcaagacaatgatgctaaagactataaagaggcaccttcagcacc |
100 |
Q |
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| T |
4483766 |
gagtaggagcaaacaagtatagagaaaaccaaccaataggaactgctgctcaatctcaagacaatgatgctaaagactataaagaggcaccttcagcgcc |
4483667 |
T |
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| Q |
101 |
tttatttgagcatcgagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggttttaact |
200 |
Q |
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| T |
4483666 |
tttatttgagcatggagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggttttaact |
4483567 |
T |
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| Q |
201 |
gttatgggtgtgaataaatccagtaataaatgctcctcagttg |
243 |
Q |
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| T |
4483566 |
gtgatgggtgtgaataaatccagtaataaatgctcctcagttg |
4483524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 35231037 - 35230952
Alignment:
| Q |
126 |
tcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggttttaactgttatgggtgt |
211 |
Q |
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| T |
35231037 |
tcatggtctttctacagagctgggatagctgagttcgttgctactttcctttttctttatatcactgttttgactgttatgggtgt |
35230952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 2650327 - 2650186
Alignment:
| Q |
75 |
gactataaagaggcaccttcagcacctttatttgagcatcgagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttt |
174 |
Q |
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| T |
2650327 |
gactacaaagaagcaccaccagcacctttgtttgagccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactttct |
2650228 |
T |
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| Q |
175 |
tgtttctttatataacggttttaactgttatgggtgtgaata |
216 |
Q |
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| T |
2650227 |
tgttcctttacatcactgtcttgactgtgatgggtgtgaata |
2650186 |
T |
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