View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8106_high_23 (Length: 241)

Name: NF8106_high_23
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8106_high_23
NF8106_high_23
[»] chr6 (17 HSPs)
chr6 (1-223)||(4265775-4265997)
chr6 (1-219)||(4471105-4471320)
chr6 (1-213)||(4575643-4575855)
chr6 (1-213)||(4623495-4623707)
chr6 (1-213)||(4561850-4562062)
chr6 (4-213)||(4627341-4627550)
chr6 (18-213)||(4298226-4298421)
chr6 (1-213)||(4482053-4482265)
chr6 (62-190)||(4594259-4594387)
chr6 (131-213)||(3173321-3173403)
chr6 (49-213)||(4581250-4581414)
chr6 (1-213)||(4258904-4259116)
chr6 (62-220)||(4462459-4462614)
chr6 (131-213)||(4503021-4503103)
chr6 (132-213)||(4618620-4618701)
chr6 (129-213)||(4517656-4517740)
chr6 (142-213)||(4507240-4507311)
[»] chr5 (1 HSPs)
chr5 (1-220)||(24104283-24104502)
[»] chr7 (1 HSPs)
chr7 (18-220)||(3087950-3088152)
[»] scaffold0477 (1 HSPs)
scaffold0477 (20-150)||(3313-3443)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4265997 - 4265775
Alignment:
Q  1 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4265997 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 4265898  T
Q  101 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4265897 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 4265798  T
Q  201 ctgaaaccatcaagagaatttgg 223  Q
    |||||||||||||||||||||||    
T  4265797 ctgaaaccatcaagagaatttgg 4265775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4471105 - 4471320
Alignment:
Q  1 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 100  Q
    |||||||||| ||||  | |||||||| ||| || |||| |||| || |||||||   || ||||||||||||||||||| ||||||||||||||||||     
T  4471105 tgtaacaatcagaaattatgcaagtaactggagggataagaccagcagtggcagaggcatcaagtctagtaagaagttcaccaaagggttgaaggaagtc 4471204  T
Q  101 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 200  Q
    ||||||||||||| | | ||  | || |||||||||| ||  |||||||   | |||||||| ||| | ||||| ||| ||||||||||| |||||||||    
T  4471205 cgtcatgattgatcgaaaaaaggagtgtatgtcttgaataagatcacca---ctttccattgcagtaaaaccatttggaatggtctcaaagttaaagtca 4471301  T
Q  201 ctgaaaccatcaagagaat 219  Q
     ||||||||||||||||||    
T  4471302 gtgaaaccatcaagagaat 4471320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 4575643 - 4575855
Alignment:
Q  1 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 100  Q
    |||| ||||| ||||| |||||||| | ||| || |||| |||| || ||||||| |  |||||| ||| ||||||||||||||||   ||  | |||||    
T  4575643 tgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagtcttgaagtttagcaagaagttcatcaaagaagtggcgaaagtt 4575742  T
Q  101 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 200  Q
    ||| ||||||||||   |||||| || || ||||||| |  |||||||||| || ||| ||||||||| |||||||||||| |||||||| |||||||||    
T  4575743 cgttatgattgattcaccaagagagtgtaggtcttgacttacatcaccattaccatcctttggagttaaaccatctggtatagtctcaaagttaaagtca 4575842  T
Q  201 ctgaaaccatcaa 213  Q
     ||||||||||||    
T  4575843 gtgaaaccatcaa 4575855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 4623495 - 4623707
Alignment:
Q  1 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 100  Q
    |||||||||||||||| |||||||||| |||||||| || |||| || ||||||| | ||||||| | | ||||||||||  |||||| |||  ||| ||    
T  4623495 tgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcagagtcatgaagttttgcaagaagttcacaaaagggatgatagaaatt 4623594  T
Q  101 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 200  Q
    | || | ||||| |    ||||| |  |||||||||| || |||||||||  ||||||||||| |||| ||||||||| ||||||||||| ||||||||     
T  4623595 cttccttattgaatcagaaagagagggtatgtcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatggtctcaaagttaaagtcc 4623694  T
Q  201 ctgaaaccatcaa 213  Q
     ||||||||||||    
T  4623695 gtgaaaccatcaa 4623707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 4561850 - 4562062
Alignment:
Q  1 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 100  Q
    |||| ||||| ||||| |||||||| | ||| || |||| |||| || ||||||| |  |||||| ||| ||||||||||||||||   ||  | |||||    
T  4561850 tgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagtcttgaagtttagcaagaagttcatcaaagaagtggtgaaagtt 4561949  T
Q  101 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 200  Q
    ||| ||||||||||   |||||| || || ||||||| ||  ||||||||  || ||| ||||||||| |||||||||||| |||||||| |||||||||    
T  4561950 cgttatgattgattcaccaagagagtgtaggtcttgactaatatcaccatcaccatcctttggagttaaaccatctggtatagtctcaaagttaaagtca 4562049  T
Q  201 ctgaaaccatcaa 213  Q
     ||||||||||||    
T  4562050 gtgaaaccatcaa 4562062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 4627341 - 4627550
Alignment:
Q  4 aacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagttcgt 103  Q
    ||||||| ||||| |||||||||| ||||| || || |||| || |||| || | ||||||| ||| |||||||||| ||||||| |||||||||||| |    
T  4627341 aacaatctgaaactaagcaagtaactggtgcaacaagaccagcagtggctgagtcatgaagtttagcaagaagttcaccaaagggctgaaggaagttctt 4627440  T
Q  104 catgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactg 203  Q
      | ||||||||   |||||    ||||||||||||| |||| ||||  ||||| | ||| |||| |||||||||||||||||||||  |||| |||  |    
T  4627441 tcttattgattgggaaagagatggtatgtcttgagtaacatcgccatcaccttctagtggtgttaaaccatctggtatggtctcaaaggtaaaatcatcg 4627540  T
Q  204 aaaccatcaa 213  Q
    ||||||||||    
T  4627541 aaaccatcaa 4627550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 4298421 - 4298226
Alignment:
Q  18 aagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattgca 117  Q
    |||||||||| |||||| | || |||| || ||||||| | | ||||| ||| |||||||||| ||||||| |||||||||||| |  ||||||||||      
T  4298421 aagcaagtaactggtggtacaagaccagcagtggcagaatcacgaagtttagcaagaagttcaccaaagggctgaaggaagttctttctgattgattggg 4298322  T
Q  118 caagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaa 213  Q
     |||||    ||||||||||||| |||| ||||  |||||| ||||||| ||||||||||| || ||||||||  ||||||   ||||||||||||    
T  4298321 aaagagatggtatgtcttgagtaacatctccatcaccttccgttggagtcagaccatctggaatagtctcaaagctaaagttggtgaaaccatcaa 4298226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 4482053 - 4482265
Alignment:
Q  1 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 100  Q
    |||| ||||| ||||| |||||||| | ||| || |||| |||| || ||||||||| ||||||| |||  |||| ||||||||||   ||  | |||||    
T  4482053 tgtagcaatcagaaactaagcaagtgactggggggataataccagcagtggcagattcatgaagtttagccagaaattcatcaaagaagtggcgaaagtt 4482152  T
Q  101 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 200  Q
    |||||||||||||||   ||||| | ||| ||||||| |  | ||| |||  ||||| |||||||||| |||||||||||| || |||||  |||| |||    
T  4482153 cgtcatgattgattgagtaagagagaataagtcttgacttacttcatcatcaccttcaattggagttaaaccatctggtatcgtttcaaaggtaaaatca 4482252  T
Q  201 ctgaaaccatcaa 213  Q
     ||||||||||||    
T  4482253 gtgaaaccatcaa 4482265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 4594259 - 4594387
Alignment:
Q  62 aagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccatt 161  Q
    |||||| ||||||||||||  |||||||| |||||| ||| |  | || |||||  |||||| |  |||||||||| || |||||||||  |||||||||    
T  4594259 aagtcttgtaagaagttcacaaaagggtttaaggaaattctttcttatagattgagcaagagagggtatgtcttgactaacatcaccatcaccttccatt 4594358  T
Q  162 ggagttagaccatctggtatggtctcaaa 190  Q
    || |||||||||||||||||||| |||||    
T  4594359 ggtgttagaccatctggtatggtttcaaa 4594387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 3173321 - 3173403
Alignment:
Q  131 gtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaa 213  Q
    ||||||| || |||||||||  |||||||||| ||||| |||||||||||| |||||||| ||||| ||| ||||||||||||    
T  3173321 gtcttgactaacatcaccatcaccttccattgaagttaaaccatctggtatagtctcaaagttaaaatcattgaaaccatcaa 3173403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 4581250 - 4581414
Alignment:
Q  49 tggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattgcaca-agagggtatatgtcttgagtagcatcac 147  Q
    ||||||| | || |||||||| ||||||||||  ||| ||||| ||||||||| |  ||||||||| |||| ||||  |||||||||||| || ||||||    
T  4581250 tggcagagtcattaagtctagcaagaagttcacaaaaaggttgtaggaagttctttctgattgatt-cacatagagcatatatgtcttgattaacatcac 4581348  T
Q  148 cattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaa 213  Q
     || |||||| || ||||||| ||||||||| || ||||||||  |||| ||  ||||||||||||    
T  4581349 tatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcggtgaaaccatcaa 4581414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4259116 - 4258904
Alignment:
Q  1 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 100  Q
    |||||||||| ||||| ||||||||||  ||||||| || ||||  | |||| || |  |||||| ||| |||||||||| ||||||| |||||||||||    
T  4259116 tgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggctgagtcttgaagtttagcaagaagttcaccaaagggctgaaggaagtt 4259017  T
Q  101 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 200  Q
    | |  | || |||||   ||| | |  || |||||||||| |||| ||||  ||||||| |||||| ||||||||| | || ||||||||  |||| |||    
T  4259016 ctttcttatagattgagaaagggagggtacgtcttgagtaacatcgccatcaccttccactggagtcagaccatcttgaatagtctcaaaggtaaaatca 4258917  T
Q  201 ctgaaaccatcaa 213  Q
     ||||||||||||    
T  4258916 atgaaaccatcaa 4258904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 4462459 - 4462614
Alignment:
Q  62 aagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccatt 161  Q
    |||||| ||||||||||||  ||||||||||| ||||||| ||||||||||||| | ||    || || |||||||  | |||||||| |   |||||||    
T  4462459 aagtcttgtaagaagttcactaaagggttgaatgaagttcatcatgattgattgaaaaaataagtgtacgtcttgaaaaacatcaccagt---ttccatt 4462555  T
Q  162 ggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatt 220  Q
    |  || | ||||| ||| ||||||||||| ||||||||| |||||||||| ||||||||    
T  4462556 gttgtaaaaccatttggaatggtctcaaagttaaagtcagtgaaaccatctagagaatt 4462614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 4503103 - 4503021
Alignment:
Q  131 gtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaa 213  Q
    ||||||| || |||||||||  |||||||  ||||||| |||||||||||||||||||||  |||| ||| ||||||||||||    
T  4503103 gtcttgactaacatcaccatcaccttccaccggagttaaaccatctggtatggtctcaaaggtaaaatcattgaaaccatcaa 4503021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 4618620 - 4618701
Alignment:
Q  132 tcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaa 213  Q
    |||||| || |||||||||  ||||||||||| |||| ||||||||| ||| ||||||| ||||||||  ||||||||||||    
T  4618620 tcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatgctctcaaagttaaagtccgtgaaaccatcaa 4618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 4517656 - 4517740
Alignment:
Q  129 atgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaa 213  Q
    ||||||||| || ||||||||| |||||| || ||||||| ||||||||| || ||||||||  |||| ||| ||||||||||||    
T  4517656 atgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaa 4517740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 4507240 - 4507311
Alignment:
Q  142 catcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaa 213  Q
    |||||||||  || ||||||||||||| |||||||||||  |||||||| ||||| ||| ||||||||||||    
T  4507240 catcaccatcaccatccattggagttaaaccatctggtagagtctcaaagttaaaatcagtgaaaccatcaa 4507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24104283 - 24104502
Alignment:
Q  1 tgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagtt 100  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24104283 tgtaacaatccgaaactaagcaagtaattggtggaataacaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggctgaaggaagtt 24104382  T
Q  101 cgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtca 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24104383 cgtcatgattgattgcacaagagggtatatgtcttgagtaacatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtca 24104482  T
Q  201 ctgaaaccatcaagagaatt 220  Q
     |||||||||||||||||||    
T  24104483 ttgaaaccatcaagagaatt 24104502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 3087950 - 3088152
Alignment:
Q  18 aagcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattgca 117  Q
    |||||||||| ||||||||||| |||| ||| |||||| | ||||| || |  |||||||||| |||||||||||| ||||||| |    | ||||||      
T  3087950 aagcaagtaactggtggaataagaccagcatcggcagagtcatgaattcgacgaagaagttcaccaaagggttgaatgaagttctttccaactgattgac 3088049  T
Q  118 caagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagaga 217  Q
     |||||     | ||||||| || |||||||||| |||||||||||||||||||||||| | || ||||||||   ||| ||| ||||||||||||||||    
T  3088050 aaagagatgccaagtcttgactaacatcaccattaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagaga 3088149  T
Q  218 att 220  Q
    |||    
T  3088150 att 3088152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 3443 - 3313
Alignment:
Q  20 gcaagtaattggtggaataaaaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattgcaca 119  Q
    |||||||| | |||||| || |||| || ||||||| | ||||||| ||  |||||||||||  ||||| |||| ||| |||||  | || ||||| |||    
T  3443 gcaagtaacttgtggaacaagaccagcagtggcagagtcatgaagtttaacaagaagttcattgaagggctgaaagaaattcgttcttatagattgaaca 3344  T
Q  120 agagggtatatgtcttgagtagcatcaccat 150  Q
    |||| |  ||||||||||||| |||||||||    
T  3343 agagagggtatgtcttgagtaacatcaccat 3313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University