View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_high_27 (Length: 225)
Name: NF8106_high_27
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 22837000 - 22836802
Alignment:
| Q |
16 |
aaaggaacagaagtcttagtgaagttaagttggagagatttggaatgggaccgttgaaacggttgcgtttaaggctgagtacacggagctgagtaagtgc |
115 |
Q |
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| T |
22837000 |
aaaggaacaaaagtcttagtgaagttaagttggagagatttggaatgggaccgttgaaacggttgcgtttaaggctgagtacacggagctgagtaagtgc |
22836901 |
T |
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| Q |
116 |
ggttaacggttccatcgagccgtggaggtcgaggttttcgaggactaggcgggagacacggttcctaagacaagagacaccgtaccatgtgcacaggtt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
22836900 |
ggttaacggttccatcgagccgtggaggtcgaggttttcgaggacaaggcgggagacacggtttcttagacaagagacaccgtaccatgtgcataggtt |
22836802 |
T |
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