View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_high_9 (Length: 313)
Name: NF8106_high_9
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 40207807 - 40208100
Alignment:
| Q |
19 |
aaagtgaacaagtcacttgtaaaattgttactttacatgagccaaattaacnnnnnnn-tcaaggtaaatcgttaattaacaaatcaaagatgaatattg |
117 |
Q |
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| T |
40207807 |
aaagtgaacaagtcacttgtaaaattgttactttagatgagccaaattaaccaaaaaaatcaaggtaaatcgttaattaacaaatcaaagatgaatattg |
40207906 |
T |
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| Q |
118 |
ttagaattagttggaataacatttaaggttgtcactataaagtgtatatcatatacactttccgactaaataactaacttgtaactaccttaaacaacat |
217 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207907 |
ttagaattagttggaatatcgtttaaggttgtcactataaagtgtatatcata--cactttccgactaaataactaacttgtaactaccttaaacaacat |
40208004 |
T |
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| Q |
218 |
tcaacgaaatcaagtgagaacggtagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattccc |
313 |
Q |
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| T |
40208005 |
tcaacgaaatcaagtgagaacggtagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattccc |
40208100 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 21793305 - 21793237
Alignment:
| Q |
241 |
tagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaat |
309 |
Q |
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| T |
21793305 |
tagcataccagagataccggcggtgcagtaaacaagaatgaaaatcatgccaccaaaagcccaagcaat |
21793237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 31460746 - 31460812
Alignment:
| Q |
246 |
taccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcc |
312 |
Q |
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| T |
31460746 |
taccagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattcc |
31460812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 312
Target Start/End: Original strand, 2650119 - 2650150
Alignment:
| Q |
281 |
aagatcataccaccaaaagcccaagcaattcc |
312 |
Q |
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| T |
2650119 |
aagatcataccaccaaaagcccaagcaattcc |
2650150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 2622075 - 2622039
Alignment:
| Q |
186 |
aataactaacttgtaactaccttaaacaacattcaac |
222 |
Q |
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| T |
2622075 |
aataactaactcgtaactaccttaaacaatattcaac |
2622039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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