View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_1 (Length: 723)
Name: NF8106_low_1
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 15 - 552
Target Start/End: Complemental strand, 46401605 - 46401068
Alignment:
| Q |
15 |
cagagagtatgagcaagttgtgttttcccagatctgaatacataaagtgctattattagcataaacttcttctgaaactgaaaatgaataaaatctattt |
114 |
Q |
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| T |
46401605 |
cagagagtatgagcaagttgtgttttcccagatctgaatacataaagtgctattattagcataaacttcttctgaaactgaaaatgaataaaatctattt |
46401506 |
T |
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| Q |
115 |
gaaactagttacatgctgtattcataccggaattctccgaatgcttcagtaatcgacagtgtctcgattccacctttttcaaacattaagaagaaattca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46401505 |
gaaactagttacatgctgtattcataccggaattctccgaatgcttcagtaatcgacagtgtctcgattccacctttttcaaacattaagaagaaattca |
46401406 |
T |
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| Q |
215 |
aagagaaaataattacaaacatataggattcaaaattaacgattcatataagtagaaaaatgcaaaactataaaaaagaaattctcgttgaaaatctacc |
314 |
Q |
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| T |
46401405 |
aagagaaaataattacaaacatataggattcaaaattaacgattcgtataagtagaaaaatgcaaaactataaaaaagaaattctcgttgaaaatctacc |
46401306 |
T |
|
| Q |
315 |
tcctagcaattcatcaagcgcttgacttccagtagtaattcgaaccacagactttctctgcaaaacagaggacaaataaattattaaattaaataaaact |
414 |
Q |
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| T |
46401305 |
tcctagcaattcatcaagcgcttgacttccagtagtaattcgaaccacagactttctctgcaaaacagaggacaaataaattattaaattaaataaaact |
46401206 |
T |
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| Q |
415 |
agatgtacttaagctttattaacagagcacaaaattgaatccataattcaaaaaactagaagcaaaataacaacgtactttgagcagtgcatcacttcca |
514 |
Q |
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| T |
46401205 |
agatgtacttaagctttattaacagagcacaaaattgaatccataattcaaaaaactagaagcaaaataacaacgtactttgagcagtgcatcacttcca |
46401106 |
T |
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| Q |
515 |
gtaatgtaaccagaattctgcatcggaagtgagaattc |
552 |
Q |
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| T |
46401105 |
gtaatgtaaccagaattctgcatcggaagtgagaattc |
46401068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 597 - 706
Target Start/End: Complemental strand, 46401023 - 46400914
Alignment:
| Q |
597 |
cttagatttcagatgttatattcagtaatcactaaccacgagcttctcagcagcttcacagatcttatcaaccttcgcctcagataaacctttgattcca |
696 |
Q |
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| T |
46401023 |
cttagatttcagatgttatattcagtaatcactaaccacgagcttctcagcagcttcacagatcttatcaaccttcgcctcagataaacctttgattcca |
46400924 |
T |
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| Q |
697 |
gtcaaattct |
706 |
Q |
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| T |
46400923 |
gtcaaattct |
46400914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 629 - 707
Target Start/End: Complemental strand, 18554915 - 18554837
Alignment:
| Q |
629 |
taaccacgagcttctcagcagcttcacagatcttatcaaccttcgcctcagataaacctttgattccagtcaaattctg |
707 |
Q |
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| T |
18554915 |
taaccacaagcttctcagcagcttcacagattttatcaaccttcgcctcagataaacctgtgattccagtcaaattctg |
18554837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 27744068 - 27744162
Alignment:
| Q |
305 |
aaaatctacctcctagcaattcatcaagcgcttgacttccagtagtaattcgaaccacagactttctctgca-aaacagaggacaaataaattat |
398 |
Q |
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||||||| |||||||| |||||||||||| |||| |||||| | | | || |||| | |||||||||||||| ||||||| | ||||||||||| |
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| T |
27744068 |
aaaatcttcctcctagtaattcatcaagcacttggcttccaattgcatttggaactaaagactttctctgcagtaacagagtaaaaataaattat |
27744162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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