View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_10 (Length: 325)
Name: NF8106_low_10
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 32870143 - 32870460
Alignment:
| Q |
1 |
ctactcaagtgaaggggacttttgggtacgaacaaatttattcccttcctctcaacatatcatttatgatatattaagctcatgaattatcaatagctgc |
100 |
Q |
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| T |
32870143 |
ctactcaagtgaaggggactttcgggtatgaaaaaatttattcccttcctctcaacatatcatttatgatatattaagctcatgaattatcaatagctgc |
32870242 |
T |
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| Q |
101 |
ttacaggtatctggatccagaatatgcttatactggacaacttactgataaatcagatgtttactcttatggagtcgtgctccttgagttaataactgga |
200 |
Q |
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| T |
32870243 |
ttacaggtatctggatccagaatatgcttatactggacgacttactgataaatccgatgtttactcttatggagtcgtgctccttgagttaataactgga |
32870342 |
T |
|
| Q |
201 |
cgacgaccgattgataaagctaaccctcacaagcacgttagtttggttgagtgggtaagtgctataccaccatatagagtttatatattactccctcatt |
300 |
Q |
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| T |
32870343 |
cgagtagcgattgataaagctaaccctcacatggacgttaatttggttgagtgggtaagtgttataccacc--atagagtttatatattactccctcctt |
32870440 |
T |
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| Q |
301 |
ctcataataatcgactcatt |
320 |
Q |
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| T |
32870441 |
ctcataataaccgactcatt |
32870460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 290
Target Start/End: Original strand, 32903541 - 32903757
Alignment:
| Q |
69 |
atatattaagctcatgaattatcaatagctgcttacaggtatctggatccagaatatgcttatactggacaacttactgataaatcagatgtttactctt |
168 |
Q |
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| T |
32903541 |
atatatcaagctcatgagctatctattgctgtctacaggtatctggctccagaatatgctgctagtggaaaacttaccgataaatcagatgttttctctt |
32903640 |
T |
|
| Q |
169 |
atggagtcgtgctccttgagttaataactggacgacgaccgattgataaagctaaccctcacaagcacgttagtttggttgagtgggtaagtgctatacc |
268 |
Q |
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| T |
32903641 |
atggagtcatgctccttgagttattaactggacgacgaccggttgataaagatcagacttacatggatgatagtttggttgagtgggtaagtgtt----- |
32903735 |
T |
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| Q |
269 |
accatatagagtttatatatta |
290 |
Q |
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| T |
32903736 |
accatagagagtttatatatta |
32903757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 261
Target Start/End: Original strand, 16394571 - 16394745
Alignment:
| Q |
87 |
ttatcaatagctgcttacaggtatctggatccagaatatgcttatactggacaacttactgataaatcagatgtttactcttatggagtcgtgctccttg |
186 |
Q |
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| T |
16394571 |
ttatcaattgctgcttacaggtatatggctccagaatatgtctctagtggacaacttacagacaaatcagatgttttctcttatggagtcatactccttg |
16394670 |
T |
|
| Q |
187 |
agttaataactggacgacgaccgattgataaagctaaccctcacaagcacgttagtttggttgagtgggtaagtg |
261 |
Q |
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| T |
16394671 |
agttaataactggacgaaagccgattgataaagataagacttacatgaacgatagtttggttgagtgggtaagtg |
16394745 |
T |
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