View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_15 (Length: 284)
Name: NF8106_low_15
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 34536529 - 34536783
Alignment:
| Q |
19 |
ggaaatacctccctgatcttaaattgcatacttctgaattcagcaacccgtatcttttctcggaatgtgtgtctggggtcgtgtcatctcgtagtatggg |
118 |
Q |
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| T |
34536529 |
ggaaatacctccctgatcttaaattgcatacttctgaattcagcaacccgtatcttttctcggaatgtgtgtctggggtcgtgtcatctcgtagtatggg |
34536628 |
T |
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| Q |
119 |
aaatcatcccttacgtactcttgactttgatcgtcatggttgttttcaacataagatattcactgaactcgtaaaacatgccatgtctaatggtcttcag |
218 |
Q |
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| T |
34536629 |
aaatcatcccttacgcactcttgactttgatcgtcatggttgttttcaacataagatattcactgaactcgtaaaacatgccatgtctaatggtcttcag |
34536728 |
T |
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| Q |
219 |
aaactgagcatagttgttccgtctaatattggtttgccgtgttctattttttctt |
273 |
Q |
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| T |
34536729 |
aaactgagcatagttgttccgtctaatattggtttgccgtgttctattttttctt |
34536783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 34502451 - 34502364
Alignment:
| Q |
90 |
tctggggtcgtgtcatctcgtagtatgggaaatcatcccttacgtactcttgactttgatcgtcatggttgttttcaacataagatat |
177 |
Q |
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| T |
34502451 |
tctgggattgtgtcatctcgtagtatgggaaaatatcccttacatactcttgactttgatcatcgtagtttctttcaacgtaagatat |
34502364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 34513136 - 34513055
Alignment:
| Q |
99 |
gtgtcatctcgtagtatgggaaatcatcccttacgtactcttgactttgatcgtcatggttgttttcaacataagatattca |
180 |
Q |
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| T |
34513136 |
gtgtcatctcgtagcaaaggaaaatatcccttacgtactcttgaattctatcatcgttgtttctttcaacataagatattca |
34513055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 30145733 - 30145650
Alignment:
| Q |
99 |
gtgtcatctcgtagtatgggaaatcatcccttacgtactcttgactttgatcgtcatggttgttttcaacataagatattcact |
182 |
Q |
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| T |
30145733 |
gtgtcatcttgtagtaagagaaatcatctcttacatactcttgactccaatcaccattgttcttttcaacataagatattcact |
30145650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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