View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_16 (Length: 278)
Name: NF8106_low_16
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 28343188 - 28343429
Alignment:
| Q |
17 |
atgctacacgagtaaatccaattttgattgttactatcattacttcttgattttatgagtaaat----------cca--at-ttagattctccttccaat |
103 |
Q |
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| T |
28343188 |
atgctacacgagtaaatccaattttgattgttactatcattacttcttgattttatgagcaaatattacaacgaccacgatcttagattctccctccaat |
28343287 |
T |
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| Q |
104 |
tcnnnnnnnnnnnngagtaattaggatataaccgtttcagtgttttattcaactcctaacaggccagatcatacgtagtttccttagaacttatttcaat |
203 |
Q |
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| T |
28343288 |
tcaaaatagaaaaagagtaattagaatataaccgtttcagtgttttattcaactcctaacaggccagatcatacgtagtttccttagaacttatttcaat |
28343387 |
T |
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| Q |
204 |
taatttcttaacactttacatacttcaatcaacctaggatcc |
245 |
Q |
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| T |
28343388 |
taatttcttaacactttacatacttcaatcaacctaggatcc |
28343429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 568891 - 568851
Alignment:
| Q |
203 |
ttaatttcttaacactttacatacttcaatcaacctaggat |
243 |
Q |
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| T |
568891 |
ttaatttcttaacactttacatacttcaattaacttaggat |
568851 |
T |
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