View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_18 (Length: 274)
Name: NF8106_low_18
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 7289084 - 7289329
Alignment:
| Q |
20 |
cacttttacggttacgactgggctagttttagacagaacactcataagacaaaaaagttagattatttttcatttaggagtgattttaaatctcatgcag |
119 |
Q |
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| T |
7289084 |
cacttttacggttaccactgggctagttttagacagaacactcataagacaaaaaagttagattgtttttcatttaggagtgattttaaatctcatgcag |
7289183 |
T |
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| Q |
120 |
atttgatcttgcccatttcaaggaatcttccattcaatgatgggttctggtttgaaattcaaaattcaactgatgtgggtttgaaggaatttgtggttcc |
219 |
Q |
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| T |
7289184 |
atttgatcttgcccatttcaaggaatcttccattcaatgatgggttctggtttgaaattcaaaattcaactgatgtgggtttgaaggaatttgtggttcc |
7289283 |
T |
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| Q |
220 |
tcaaaatgcttatagggctgttttagaagtgtatgtttcttctcat |
265 |
Q |
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| T |
7289284 |
tcaaaatgcttatagggctgttttagaagtgtatgtttcttttcat |
7289329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 54 - 258
Target Start/End: Original strand, 7292870 - 7293068
Alignment:
| Q |
54 |
agaacactcataagacaaaaaagttagattatttttcatttaggagtgattttaaatctcatgcagatttgatcttgcccatttcaaggaatcttccatt |
153 |
Q |
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| T |
7292870 |
agaagactcataagacaaaaaagtttgattctttagcatttaggagtggtttt------catgcagatttgatcttgcccatttcaaggaatctcccaaa |
7292963 |
T |
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| Q |
154 |
caatgatgggttctggtttgaaattcaaaattcaactgatgtgggtttgaaggaatttgtggttcctcaaaatgcttatagggctgttttagaagtgtat |
253 |
Q |
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| T |
7292964 |
aaatgatgtgttgtggtttgaaattcaaaattcaactgatgtgggtgtaaaggaatttgtggttcctcaaaatgcttatagggctgtgttagaagtgtat |
7293063 |
T |
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