View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8106_low_2 (Length: 532)

Name: NF8106_low_2
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8106_low_2
NF8106_low_2
[»] chr5 (6 HSPs)
chr5 (1-516)||(41090726-41091234)
chr5 (55-129)||(41100951-41101025)
chr5 (465-516)||(2436982-2437033)
chr5 (32-127)||(41079328-41079423)
chr5 (324-393)||(41079749-41079826)
chr5 (238-268)||(41079650-41079680)
[»] chr6 (2 HSPs)
chr6 (468-516)||(6898221-6898269)
chr6 (466-517)||(7977768-7977819)
[»] chr4 (3 HSPs)
chr4 (468-510)||(15724483-15724525)
chr4 (468-516)||(18513175-18513223)
chr4 (468-516)||(34306744-34306792)
[»] chr2 (1 HSPs)
chr2 (466-504)||(35056962-35057000)
[»] chr1 (2 HSPs)
chr1 (468-518)||(38078601-38078651)
chr1 (468-516)||(46940748-46940796)
[»] scaffold0053 (1 HSPs)
scaffold0053 (468-516)||(8869-8917)
[»] scaffold0020 (1 HSPs)
scaffold0020 (468-516)||(135263-135311)


Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 41090726 - 41091234
Alignment:
Q  1 gttgtagaactcatctgtttca-agtccccaagtgctacaaaatcttcatcaaatggtggcgttcaccttcaccggtggtagtggcacctcagccagtca 99  Q
    |||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41090726 gttgtagaactcatctgtttcatagtccctaattgctacaaaatcttcatcaaatggtggcgttcaccttcaccggtggtagtggcaccgcagccagtca 41090825  T
Q  100 atgaggtccagatgggtccagtttgaagccgagnnnnnnnnnnnnnnnnncaccatccaggtagctactttcacttgtatctgttgtttcatatgttgtt 199  Q
    |||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41090826 atgaggtccagatgggtccagtttgaagccgaggaagaagaagaaga---caccatccaggtagctactttcacttgtatctgttgtttcatatgttgtt 41090922  T
Q  200 gattctattttatcaatattatcaactcagtacttatttgcatccaataaaatcatttttaggaactaatctaaaagtgtgatttgattagatgtatgct 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41090923 gattctattttatcaatattatcaactcagtacttatttgcatccaataaaatcatttttaggaactaatctaaaagtgtgatttgattagatgtatgct 41091022  T
Q  300 ttnnnnnnntttacaccatcagtttatataaattaaaaccttaaaatatcattaagatttaaatatttgttagagtatttttaggatttgttagnnnnnn 399  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  41091023 ttaaaaagttttacaccatcagtttatataaattaaaaccttaaaatatcattaagatttaaatatttgttagagtatttttaggatttgttagttttt- 41091121  T
Q  400 nnnctttcttattttaatttaaagataaagatatgtgcttgaattataatttagccctttgcagagagctatgaagcacgaaaactcctcagattaggcg 499  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||    
T  41091122 ----tttcttattttaatttaaagataaagatatgtgcttgaattataatttagccctatgcagagagctatgaagcacgaacactcctcagattagacg 41091217  T
Q  500 tgttttggtgttggaca 516  Q
    ||  |||||||| ||||    
T  41091218 tgccttggtgttagaca 41091234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 41100951 - 41101025
Alignment:
Q  55 ggtggcgttcaccttcaccggtggtagtggcacctcagccagtcaatgaggtccagatgggtccagtttgaagcc 129  Q
    ||||||||||||| ||||||| |  |||||||||| ||||||| ||||||| |||||||  ||||||||||||||    
T  41100951 ggtggcgttcaccctcaccggcgacagtggcacctgagccagttaatgaggcccagatgcttccagtttgaagcc 41101025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 516
Target Start/End: Complemental strand, 2437033 - 2436982
Alignment:
Q  465 gagctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggaca 516  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||| |||||    
T  2437033 gagctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggaca 2436982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 41079328 - 41079423
Alignment:
Q  32 gtgctacaaaatcttcatcaaatggtggcgttcaccttcaccggtggtagtggcacctcagccagtcaatgaggtccagatgggtccagtttgaag 127  Q
    ||||||| ||||||||||||| |||||||||||| | ||||||| |  |||||| ||| || | |  ||||||||| |||||| ||||||||||||    
T  41079328 gtgctacgaaatcttcatcaagtggtggcgttcatcctcaccggcgacagtggcgcctgagacgggtaatgaggtcgagatggttccagtttgaag 41079423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 393
Target Start/End: Original strand, 41079749 - 41079826
Alignment:
Q  324 tatataaattaaaaccttaaaa-tatcattaagatttaaatat-------ttgttagagtatttttaggatttgttag 393  Q
    ||||||||||||| |||||||  |||||||||||||||||| |       ||||||||||||||||||||||||||||    
T  41079749 tatataaattaaatccttaaaggtatcattaagatttaaatttgaatattttgttagagtatttttaggatttgttag 41079826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 41079650 - 41079680
Alignment:
Q  238 tgcatccaataaaatcatttttaggaactaa 268  Q
    |||||||||||||||||||||||||||||||    
T  41079650 tgcatccaataaaatcatttttaggaactaa 41079680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 6898221 - 6898269
Alignment:
Q  468 ctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggaca 516  Q
    |||||||||||||| |||| || |||||||||||||| |||||||||||    
T  6898221 ctatgaagcacgaacactcatcggattaggcgtgtttcggtgttggaca 6898269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 517
Target Start/End: Original strand, 7977768 - 7977819
Alignment:
Q  466 agctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggacat 517  Q
    |||||||||||||||| |||||| ||||||||||||||| | ||| ||||||    
T  7977768 agctatgaagcacgaacactccttagattaggcgtgtttcgttgtcggacat 7977819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 15724483 - 15724525
Alignment:
Q  468 ctatgaagcacgaaaactcctcagattaggcgtgttttggtgt 510  Q
    |||||||||||  ||||||||| ||||||||||||||||||||    
T  15724483 ctatgaagcacataaactcctcggattaggcgtgttttggtgt 15724525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 18513175 - 18513223
Alignment:
Q  468 ctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggaca 516  Q
    |||||||||||| | ||||||||||||||||||||  |||||| |||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggaca 18513223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 34306744 - 34306792
Alignment:
Q  468 ctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggaca 516  Q
    |||||||||||||| | |||||||||||||||||| | ||||| |||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggaca 34306792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 504
Target Start/End: Complemental strand, 35057000 - 35056962
Alignment:
Q  466 agctatgaagcacgaaaactcctcagattaggcgtgttt 504  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  35057000 agctatgaagcacggacactcctcagattaggcgtgttt 35056962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 518
Target Start/End: Original strand, 38078601 - 38078651
Alignment:
Q  468 ctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggacatg 518  Q
    |||||||||||||| ||||||| ||||||||||||  |||||||| |||||    
T  38078601 ctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaacatg 38078651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 46940748 - 46940796
Alignment:
Q  468 ctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggaca 516  Q
    |||||||||||||| ||||||| |||||||||||||  ||||| |||||    
T  46940748 ctatgaagcacgaacactcctcggattaggcgtgttccggtgtcggaca 46940796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 516
Target Start/End: Complemental strand, 8917 - 8869
Alignment:
Q  468 ctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggaca 516  Q
    |||||||||||| | |||||||||||||||||||| | ||||| |||||    
T  8917 ctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggaca 8869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 135263 - 135311
Alignment:
Q  468 ctatgaagcacgaaaactcctcagattaggcgtgttttggtgttggaca 516  Q
    |||||||||||||| || |||||||||||||||||  |||||| |||||    
T  135263 ctatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggaca 135311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University