View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_21 (Length: 253)
Name: NF8106_low_21
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_21 |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 4266286 - 4266063
Alignment:
| Q |
31 |
tcaagattttaaatcatgttcccagtaataattgtg-ttgtgttgtcattttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatc |
129 |
Q |
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| T |
4266286 |
tcaagattttaaatcatgttcccagtaataattgtggttgtgttgtcattttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatc |
4266187 |
T |
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| Q |
130 |
acatatatagattcatgcacatttctcttnnnnnnnnnnnnggatcataattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattg |
229 |
Q |
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| T |
4266186 |
acatatatagattcatgcacatttctcttaaaaagaaaaaaggatcataattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattg |
4266087 |
T |
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| Q |
230 |
aaaagtacacaagaacgtagatgc |
253 |
Q |
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| T |
4266086 |
aaaagtacacaagaacgtagatgc |
4266063 |
T |
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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 4458633 - 4458718
Alignment:
| Q |
56 |
taataattgtg-ttgtgttgtcattttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatataga |
140 |
Q |
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| T |
4458633 |
taataattgtggttgtgtcgtcattttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatataga |
4458718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 4458816 - 4458853
Alignment:
| Q |
179 |
attgttacctttgagtggtagtagaccttttcgaatca |
216 |
Q |
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| T |
4458816 |
attgttacctttgagtggtagtagaccttttccaatca |
4458853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 24103988 - 24104213
Alignment:
| Q |
34 |
agattttaaatcatgttcccagtaataattgtg-ttgtgttgtcattttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatc--- |
129 |
Q |
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| T |
24103988 |
agattttaaatcatgtttccaataataattgtggttgtgttgtcattttaatgatgcacataattgccatgcgactgatgcagccctaagtgtgatcaaa |
24104087 |
T |
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| Q |
130 |
--acatatatagattcatgcacatttctcttnnnnnnnnnnnnggatcataattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaat |
227 |
Q |
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| T |
24104088 |
ttaaatatatagaatcatgcacatttctcttaaaaagaaaaaaggatcataatttttacctttgagtggtactagacctttttgaatcagattaggatat |
24104187 |
T |
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| Q |
228 |
tgaaaagtacacaagaacgtagatgc |
253 |
Q |
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| T |
24104188 |
tgaaaagtacacaagaaggtagatgc |
24104213 |
T |
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