View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_24 (Length: 250)
Name: NF8106_low_24
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21460387 - 21460152
Alignment:
| Q |
1 |
aggaagctaagtaattataactaagttatgatcctagcatctggttatacattagattttattataatttgcaactgatactcatgcaaattttcttata |
100 |
Q |
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| T |
21460387 |
aggaagctaagtaattataactaagttatgatcctagcatctgattatacattagattttattataatttgtaactgatactcatgcaaattttcttata |
21460288 |
T |
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| Q |
101 |
tatataatcaaatctaagt---nnnnnnngaaacaatactaatgcataagcataaattacttctgagtctaatttttgcaacattgaattctaaaccagt |
197 |
Q |
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| T |
21460287 |
tatataatcaaatctaagtaaaaaaaaaagaaacaatactaatgcataagcataaattacttctgagtctaatttttgcaacattgaattctaaaccagt |
21460188 |
T |
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| Q |
198 |
aggcggaagcaaatgatattttagaaggaggatttt |
233 |
Q |
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| T |
21460187 |
aggcggaagcaaatgatattttggaaggaggatttt |
21460152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 42949950 - 42949865
Alignment:
| Q |
73 |
aactgatactcatgcaaattttcttatatatataatcaaatctaagtnnnnnnngaaacaatactaatgcataagcataaattacttc |
160 |
Q |
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| T |
42949950 |
aactgatactcatgcaaattttat--tatatataatcaaatctcagtaataaaggaaacaacactaatgcataagcatacatttcttc |
42949865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 2851563 - 2851491
Alignment:
| Q |
161 |
tgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggatttt |
233 |
Q |
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| T |
2851563 |
tgagtctaacttttgcaacattgggttctaaaccaatgggcagaagcaactgataatttgggaggacgatttt |
2851491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 2903595 - 2903523
Alignment:
| Q |
161 |
tgagtctaatttttgcaacattgaattctaaaccagtaggcggaagcaaatgatattttagaaggaggatttt |
233 |
Q |
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||||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||| | |||| |||||| |
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| T |
2903595 |
tgagtctaacttttgcaacattgggttctaaaccaatgggcagaagcaactgataatttgggaggacgatttt |
2903523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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