View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_26 (Length: 247)
Name: NF8106_low_26
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 5261072 - 5261211
Alignment:
| Q |
92 |
gaatagtgatttcaacgagtaaaaataaagttcttatataaagagatggaacgaataaaattttaaaaagaaagtcgtgaaatggttttgaataatttgt |
191 |
Q |
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| T |
5261072 |
gaataatgatttcaacgagtaaaaataaagttcttatataaagagatagaacgaataaaattttaaaaagaaagtcgtgaaatggttttgaataatttgt |
5261171 |
T |
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| Q |
192 |
gctaatgtgacacagaaatcaaaggctcggtagaagtttg |
231 |
Q |
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| T |
5261172 |
gctaatgtgacacagaaatcaaaggctcggtagaagtttg |
5261211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 5277820 - 5277973
Alignment:
| Q |
78 |
gaaaatacttgagagaatagtgatttcaacgagtaaaaataaagttcttatataaagagatggaacgaataaaattttaaaaagaaagtcgtgaaatggt |
177 |
Q |
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| T |
5277820 |
gaaaatacttgagagaataatgatttcaacggttaaaaataaagttcttatataagtagatagaacgaataaaattttaaaaagaaagtcatgaaatggt |
5277919 |
T |
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| Q |
178 |
tttgaataatttgtgctaatgtgacacagaaatcaaaggctcggtagaagtttg |
231 |
Q |
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| T |
5277920 |
ttagaataatctgtgctaatgtgacactgaaatcagaggctcggtagaagtttg |
5277973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5257864 - 5257933
Alignment:
| Q |
1 |
ttacatttggaagcataaagaaatactttcattgtgtaccttactgaaggttctccaacaatcatgcttg |
70 |
Q |
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| T |
5257864 |
ttacatttggaagcataaagaaatactttcattgtgtaccttactgaaggttctccaacaatcacgcttg |
5257933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 5277706 - 5277746
Alignment:
| Q |
30 |
cattgtgtaccttactgaaggttctccaacaatcatgcttg |
70 |
Q |
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| T |
5277706 |
cattgtgtaccttactgaaggttctctaacaatcatgcttg |
5277746 |
T |
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