View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_29 (Length: 240)
Name: NF8106_low_29
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5390497 - 5390722
Alignment:
| Q |
1 |
tgccgggtatgaacctaactataaatcaaacctcaaactaaacatattgagaaatgtgagaaacatttgctttctaacactctttttaacactcactatc |
100 |
Q |
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| T |
5390497 |
tgccgggtatgaacctaactatacatcaaacctcaaactaaacatattgagaaatgctagaaacattcgctgtttaacattctctttaacactcactctc |
5390596 |
T |
|
| Q |
101 |
ttatcgagggaactcatgtgaatcataccacttt--gtgatacccaattctaaagtgtgagacccatgtgaatttgatccaataagagagtaaatgttag |
198 |
Q |
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|||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
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| T |
5390597 |
ttatcg-gggaactcatgtgaatcacaccactttaggtgatactcaattctaaagtgtgagacccatatgagtttgatccaatgagagagtaaatgttag |
5390695 |
T |
|
| Q |
199 |
agatgacattagaaaaaaggtgctcag |
225 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
5390696 |
agatgacattagaaaaaaggtgctcag |
5390722 |
T |
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