View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_3 (Length: 464)
Name: NF8106_low_3
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_3 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: scaffold1051 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 2222 - 2681
Alignment:
| Q |
1 |
tttcattaatcacttcttgaggaagatgttcgctcttcttcgccattttgtggaggcacttatgcgtttgagttggactatctcacactttatttataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222 |
tttcattaatcacttcttgaggaagatgttcgctcttcttcgccattttgcggaggcacttatgcgtttgagttggactatctcacactttatttataca |
2321 |
T |
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| Q |
101 |
caaaaaatctgttaagttgccttgctcacttgattattccttatttgctactatatgatgaactctttcccaatgcactttgtaaaatgcattactccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2322 |
caaaaaatctgttaagttgccttgctcacttgattattccttatttgctactatatgatgaactctttcccaatgcactttgtaaaatgcattactccac |
2421 |
T |
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| Q |
201 |
tcaaacaaagattgtgcaaaaagaatacttatacaagaataacataaaactaaccatgaccagaatacaagaattgcataaaacaagaatagcacaacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2422 |
tcaaacaaagattgtgcaaaaagaatacttatacaagaataacataaaactaaccatgaccagaatacaagaattgcataaaacaagaatagcacaacca |
2521 |
T |
|
| Q |
301 |
gaatcaaacaatgattgggcctcaaactaaccttcaatttcttgtttccttttcccctttttgtttaagtacaaaatttaacactaactccattttactc |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2522 |
gaatcaaacaatgattgggccacaaactaaccttcaatttcttgtttccttttcccctttttgtttaagtacaaaatttaacactaactccattttactc |
2621 |
T |
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| Q |
401 |
actcatgacatcttcatacttctaaactctcattaattatctataggaatatcaaagagaactc |
464 |
Q |
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| T |
2622 |
actcatgacatcttcatacttctaaactctc----attatctataggaatatcaaagaaaactc |
2681 |
T |
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