View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8106_low_32 (Length: 237)
Name: NF8106_low_32
Description: NF8106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8106_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7288951 - 7288727
Alignment:
| Q |
1 |
ccaaacaatcccattttgtcttggttctgcagtacagcttctgagtaactcaacaccatcaagccaaacaccaaaaattcgatcaaattgtcttccttca |
100 |
Q |
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| T |
7288951 |
ccaaacaatcccattttgtcttggttctgcagtacagcttctgagtaactcaacaccatcaagccaaacaccaaaaattcgatcaaattgtcttccttca |
7288852 |
T |
|
| Q |
101 |
catgttgctttccattcaagaacaattttggagaattttgaatataagcaatgtgaaggtggggtgtaattagcaagaactggtgggtttccatatgtgt |
200 |
Q |
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| T |
7288851 |
catgttgctttccattcaagaacaattttggagaattttgaatataagcaatgtgaaggtggggtgtaattagcaagaactggtgggtttccatatgtgt |
7288752 |
T |
|
| Q |
201 |
aaccaaaatcatgatgaagaatgtg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
7288751 |
aaccaaaatcatgatgaagaatgtg |
7288727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7292709 - 7292485
Alignment:
| Q |
1 |
ccaaacaatcccattttgtcttggttctgcagtacagcttctgagtaactcaacaccatcaagccaaacaccaaaaattcgatcaaattgtcttccttca |
100 |
Q |
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|
|||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||| || |
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| T |
7292709 |
ccaaacaatcccatttgctattggttctgcagtacagcttctgagtaactcaactccaccaagccaaacaccgaaaattcgatcatattgtcttccctcg |
7292610 |
T |
|
| Q |
101 |
catgttgctttccattcaagaacaattttggagaattttgaatataagcaatgtgaaggtggggtgtaattagcaagaactggtgggtttccatatgtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| | || ||||||| || || |||||||| |||||||||||||| || ||||||||||||| |
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| T |
7292609 |
catgttgctttccattcaagaacaattttggagaattttttaaatgagcaatgagagggaggggtgtagttagcaagaactgggggatttccatatgtgt |
7292510 |
T |
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| Q |
201 |
aaccaaaatcatgatgaagaatgtg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
7292509 |
aaccaaaatcatgatgaagaatgtg |
7292485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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